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ChronosFD

Biochemistry & Molecular Biology (Membranes, Nucleic Acids, Proteins)

Cotranslational Protein Folding Within the Ribosome Tunnel Influences Trigger-factor Recruitment.
Lin, K.F., Sun, C.S., Huang, Y.C., Chan, S.I., Koubek, J., Wu, T.H., Huang, J.J.
Biophys J., 2012, 102(12), 2818-27.
The N-terminus of TDP-43 Promotes Its Oligomerization and Enhances DNA Binding Affinity.
Chang, C.K., Wu, T.H., Wu, C.Y., Chiang, M.H., Toh, E.K., Hsu, Y.C., Lin, K.F., Liao, Y.H., Huang, T.H., Huang, J.J.
Biochem Biophys Res Commun., 2012, 425(2), 219-24.
Efficient Isolation of Pseudomonas Aeruginosa Type III Secretion Translocators and Assembly of Heteromeric Transmembrane Pores in Model Membranes.
Romano, F.B., Rossi, K.C., Savva, C.G., Holzenburg, A., Clerico, E.M., Heuck, A.P.
Biochemistry., 2011, 50(33), 7117-31.
Production of Ribosome-released Nascent Proteins With Optimal Physical Properties.
Ziehr, D.R., Ellis, J.P., Culviner, P.H., Cavagnero, S.
Anal Chem., 2010, 82(11), 4637-43.
Excited-state Lifetime Studies of the Three Tryptophan Residues in the N-lobe of Human Serum Transferrin
James, N.G., Ross, J.A., Mason, A.B., Jameson, D.M.
Protein Science, 2010, 19, 99-110.
Confined Dynamics of a Ribosome-bound Nascent Globin: Cone Angle Analysis of Fluorescence Depolarization Decays in the Presence of Two Local Motions.
Ellis, J.P., Culviner, P.H., Cavagnero, S.
Protein Sci., 2009, 18(10), 2003-15.
Structural and Thermodynamic Characterization of T4 Lysozyme Mutants and the Contribution of Internal Cavities to Pressure Denaturation.
Ando, N., Barstow, B., Baase, W.A., Fields, A., Matthews, B.W., Gruner, S.M.
Biochemistry., 2008, 47(42), 11097-109.
Chain Dynamics of Nascent Polypeptides Emerging From the Ribosome.
Ellis, J.P., Bakke, C.K., Kirchdoerfer, R.N., Jungbauer, L.M., Cavagnero, S.
ACS Chem Biol., 2008, 3(9), 555-66.
Fructose-1,6-bisphosphate Acts Both as an Inducer and as a Structural Cofactor of the Central Glycolytic Genes Repressor (CggR).
Zorrilla, S., Chaix, D., Ortega, A., Alfonso, C., Doan, T., Margeat, E., Rivas, G., Aymerich, S., Declerck, N., Royer, C.A.
Biochemistry., 2007, 46(51), 14996-5008.
Inducer-Modulated Cooperative Binding of the Tetrameric CggR Repressor to Operator DNA
Zorrilla, S., Doan, T., Alfonso, C., Margeat, E., Ortega, A., Rivas, G., Aymerich, S., Royer, C.A., Declerck, N.
Biophsyical J., 2007, 92(9), 3215-3227.
Hydration of the Folding Transition State Ensemble of a Protein.
Brun, L., Isom, D.G., Velu, P., García-Moreno, B., Royer, C.A.
Biochemistry., 2006, 45(11), 3473-80.
Time-resolved Fluorescence Anisotropy Studies Show Domain-specific Interactions of Calmodulin With IQ Target Sequences of Myosin V.
Bayley, P., Martin, S., Browne, P., Royer, C.
Eur Biophys J., 2003, 32(2), 122-7.
Reorientational Dynamics of Enzymes Adsorbed on Quartz: A Temperature-Dependent Time-Resolved TIRF Anisotropy Study
Czeslik, C., Royer, C., Hazlett, T., Mantulin, W.
Biophys. J., 2003, 84, 2533-2541.
Equilibrium Binding of Estrogen Receptor With DNA Using Fluorescence Anisotropy.
Ozers, M.S., Hill, J.J., Ervin, K., Wood, J.R., Nardulli, A.M., Royer, C.A., Gorski, J.
J Biol Chem., 1997, 272(48), 30405-11.

Environmental Studies

Real-Time Determination of Picomolar Free Cu(II) in Seawater Using a Fluorescence-Based Fiber Optic Biosensor
Zeng, H.-H., Thompson, R. B., Maliwal, B. P., Fones, G. R., Moffett, J. W., Fierke, C. A.
Anal. Chem., 2003, 75(24), 6807-6812.

Pharmaceutical Chemistry

Characterization of Fluorinated Catansomes: A Promising Vector in Drug-delivery.
Rosholm, K.R., Arouri, A., Hansen, P.L., González-Pérez, A., Mouritsen, O.G.
Langmuir., 2012, 28(5), 2773-81.
Indocyanine Green-Loaded Biodegradable Nanoparticles: Preparation, Physicochemical Characterization and in Vitro Release
Saxena, V., Sadoqi, M., Shao., J.
Int. J. Pharm., 2004, 278(2), 293-301.
Enhanced Photo-Stability, Thermal-Stability and Aqueous-Stability of Indocyanine Green in Polymeric Nanoparticulate Systems
Saxena, V., Sadoqi, M., Shao., J.
J. Photochem. Photobiol., 2004, 74(1) 29-38.
Degradation Kinetics of Indocyanine Green in Aqueous Solution
Saxena, V., Sadoqi, M., Shao., J.
J. Pharm Sci.,2003, 92(10), 2090-2097.

Physical Chemistry

Developing Red-emissive Ruthenium(II) Complex-based Luminescent Probes for Cellular Imaging.
Zhang, R., Ye, Z., Yin, Y., Wang, G., Jin, D., Yuan, J., Piper, J.A.
Bioconjug Chem., 2012, 23(4), 725-33.
Noncovalent Assembly of a Metalloporphyrin and an Iron Hydrogenase Active-site Model: Photo-induced Electron Transfer and Hydrogen Generation.
Li, X., Wang, M., Zhang, S., Pan, J., Na, Y., Liu, J., Akermark, B., Sun, L.
J Phys Chem B., 2008, 112(27), 8198-202.

Sensors

Water Soluble Indodicarbocyanine Dyes Based on 2,3-dimethyl-3-(4-sulfobutyl)-3H-indole-5-sulfonic Acid
Markova, L.I., Fedyunyayeva, I.A., Povrozin, Y.A., Semenova, O.M., Khabuseva, S.U., Terpetschnig, E.A., Patsenker, L.D.
Dyes and Pigments, 2013, 96(2), 535-46.
Seta-633 - a NIR Fluorescence Lifetime Label For Low-Molecular-Weight Analytes
Povrozin, Y.A., Kolosova, O.S., Obukhova, O.M., Tatarets, A.L., Sidorov, V.I., Terpetschnig, E.A., Patsenker, L.D.
Bioconjug Chem., 2009, 20(9), 1807-12.
Near-Infrared, Dual-Ratiometric Fluorescent Label for Measurement of pH
Povrozin, Y.A., Markova, L.I., Tatarets, A.L., Sidorov, V.I., Terpetschnig, E.A., Patsenker, L.D.
Anal Biochem., 2009, 390(2), 136-40.
Synthesis of Water-Soluble, Ring-Substituted Squaraine Dyes and Their Evaluation as Fluorescent Probes and Labels
Tatarets, A.L., Fedyunyayeva, I.A., Dyubko, T.S., Povrozin, Y.A., Doroshenko, A.O., Terpetschnig, E.A., Patsenker, L.D.
Anal Chim Acta., 2006, 570(2), 214-23.
Fatty Acid Sensor for Low-Cost Lifetime-Assisted Ratiometric Sensing Using a Fluorescent Fatty Acid Binding Protein
Bartolome, A., Bardliving, C., Rao G., Tolosa L.
Analytical Biochemistry, 2005, 34(1), 133-139.
Dual-Labeled Glucose Binding Protein for Ratiometric Measurements of Glucose
Ge, X., Tolosa, L., Rao, G.
Analytical Chemistry, 2004, 76(5), 1403-10.
Reagentless Optical Sensing of Glutamine Using a Dual-Emitting Glutamine-Binding Protein
Tolosa, L., Ge, X., Rao, G.
Analytical Biochemistry, 2003, 314(2), 199-205.

ChronosBH

Biochemistry & Molecular Biology (Membranes, Nucleic Acids, Proteins)

DNA Methylation Regulated Nucleosome Dynamics.
Jimenez-Useche, I., Ke, J., Tian, Y., Shim, D., Howell, S.C., Qiu, X., Yuan, C.
Sci Rep., 2013, 3, 2121.
Clipping of Flexible Tails of Histones H3 and H4 Affects the Structure and Dynamics of the Nucleosome
Nurse, N.P., Jimenez-Useche, I., Smith, I.T., Yuan, C.
Biophys J., 2013, 104(5), 1081-8.
The Effect of DNA CpG Methylation on the Dynamic Conformation of a Nucleosome
Jimenez-Useche, I., Yuan, C.
Biophysical Journal, 2012, 103, 2502-2512.
Conformational Dynamics of Titin PEVK Explored with FRET Spectroscopy
Huber, T., Grama, L., Hetényi, C., Schay, G., Fülöp, L., Penke, B., Kellermayer, M.S.Z.
Biophysical Journal, 2012, 103(7), 1480-1489.

Physical Chemistry

Solid State Molecular Device Based on a Rhenium(I) Polypyridyl Complex Immobilized on TiO2 Films
Patrocinio, A.O., Frin, K.P., Murakami Iha, N.Y.
Inorg. Chem., 2013, 52, 5889-5896.
A Pyrene Maleimide with a Flexible Linker for Sampling of Longer Inter-Thiol Distances by Excimer Formation
Niwayama, S., Kassar, A.S., Zhao, T., Sutton, R.B., Altenberg, G.A.
PLoS ONE, 2011, 6(10).

Diagnostics

A Dual-Modality Optical Biopsy Approach for In Vivo Detection of Prostate Cancer in Rat Model
Sharma, V., Patel, N., Shen, J., Tang, L., Alexandrakis, G., Liu, H.
Journal of Innovative Optical Health Sciences, 2011, 4(3), 269-277.
Auto-fluorescence Lifetime and Light Reflectance Spectroscopy for Breast Cancer Diagnosis: Potential Tools for Intra-Operative Margin Detection
Sharma, V., Shivalingaiah, S., Peng., Y., Euhus, D., Gryczynski, Z., Liu, H.
Biomed Opt Express, 2012, 3(8), 1825-1840.

K2

Biochemistry & Molecular Biology (Membranes, Nucleic Acids, Proteins)

Sometimes It Takes Two to Tango: Contributions of Dimerization too Functions of Human α-defensin HNP1 Peptide
Pazgier, M., Wei, G., Ericksen, B., Jung, G., Wu, Z., de Leeuw, E., Yuna, W., Szmacinski, H., Lu, W.-Y., Lubkowski, J., Lehrer, R.I., Lu, W.
J Biol Chem, 2012, 287(12), 8944-8953.
Targeting TLR4 Signaling by TLR4 TIR-derived Decoy Peptides: Identification of the TLR4 TIR Dimerization Interface
Toshchakov, V.Y., Szacinski, H., Couture, L.A., Lakowicz, J.R., Vogel, S.N.
J Immunol, 2011, 186(8), 4819-4827.
A New Competitive Fluorescence Assay for the Detection of Patulin Toxin
de Champdoré, M., Bazzicalupo, P., De Napoli, L., Montesarchio, D., Di Fabio, G., Cocozza, I., Parracino, A., Rossi, M., D'Auria, S.
Anal. Chem., 2007, 79, 751-757.
Fluorescence of Amphotericin B-Deoxycholate (Fungizone) Monomers and Aggregates and the Effect of Heat-Treatment
Stoodley, R., Wasan, K.M., Bizzotto, D.
Langmuir, 2007, 23(17), 8718-8725.
Structural Dynamics of the Actin–Myosin Interface by Site-Directed Spectroscopy
Korman, V.L., Anderson, S.E.B., Prochniewicz, E., Titus, M.A., Thomas, D.D.
Journal of Molecular Biology, 2006, 356(5), 1107-1117.
Genetic and Fluorescence Studies of Affinity Maturation in Related Antibodies
Pauyo, T., Hilinski, G.J., Chiu, P.T., Hansen, D.E., Choi, Y.J., Ratner, D.I., Shah-Mahoney, N., Southern, C.A., O'Hara, P.B.
Molecular Immunology, 2006, 43(7), 812-821.
A Fluorescence Spectroscopy Study on the Interactions of the TAT-PTD Peptide with Model Lipid Membranes
Tiriveedhi, V., Butko, P.
Biochemistry, 2007, 46, 3888-3895.
IIAGlc Inhibition of Glycerol Kinase: A Communications Network Tunes Protein Motions at the Allosteric Site
Yu, P., Lasagna, M., Pawlyk, A.C., Reinhart, G.D., Pettigrew, D.W.
Biochemistry, 2007, Printing Pending.
Inhibition of Amyloid Fibril Formation and Cytotoxicity by Hydroxyindole Derivatives
Cohen, T., Frydman-Marom, A., Rechter, M., Gazit, E.
Biochemistry, 2006, 45, 4727-4735.
Phosphorylation of a Single Head of Smooth Muscle Myosin Activates the Whole Molecule
Rovner, A.S., Fagnant, P.M., Trybus, K.M.
Biochemistry, 2006, 45, 5280-5289.
Expression and Physicochemical Characterization of an Extracellular Segment of the Receptor Protein Tyrosine Phosphatase IA-2
Primo, M.E., Sica, M.P., Risso, V.A., Poskus, E., Ermácora, M.R.
Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 2006, 1764(2), 174-181.
Structural Characterization of Novel Chitin-Binding Lectins from the GenusArtocarpus and Their Antifungal Activity
Trindade, M.B., Lopes, J.L.S., Soares-Costa, A., Monteiro-Moreira, A.C., Moreira, R.A., Oliva, M.L.V., Beltramini, L.M.
Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 2006, 1764(1), 146-152.
Direct Detection of Calmodulin Tuning By Ryanodine Receptor Channel Targets Using a Ca2+-Sensitive Acrylodan-Labeled Calmodulin
Fruen, B.R., Balog, E.M., Schafer, J., Nitu, F.R., Thomas, D.D., and Corena, R.L.
Biochemistry, 2005, 44, 278-284.
Reductive and Oxidative DNA Damage by Photoactive Platinum(II) Intercalators
Lu, W., Vicic, D.A., Barton, J.K.
Inorg. Chem., 2005, 44(22), 7970-7980.
Improved "Optical Highlighter" Probes Derived from Discosoma Red Fluorescent Protein
Robinson, L.C.
Biophys. J., 2005, 88, 1444-1457.
Essential Role for Pro21 in Phospholamban for Optimal Inhibition of the Ca-ATPase
Li, J., Boschek, C.B., Xiong, Y., Sacksteder, C.A., Squier, T.C., Bigelow, D.J.
Biochemistry, 2005, 44(49), 16181-16191.
Sequence-Specific Fluorescence Detection of DNA by Polyamide-Thiazole Orange Conjugates
Fechter, E.J., Olenyuk, B., Dervan, P.B.
J. Am. Chem. Soc., 2005, 127(47), 16685-16691.
Ethanol-Perturbed Amyloidogenic Self-Assembly of Insulin: Looking for Origins of Amyloid Strains
Dzwolak, W., Grudzielanek, S., Smirnovas, V., Ravindra, R., Nicolini, C., Jansen, R., Loksztejn, A., Porowski, S., Winter, R.
Biochemistry, 2005, 44(25), 8948-8958.
Probing the Interior of Peptide Amphiphile Supramolecular Aggregates
Tovar, J.D., Claussen, R.C., Stupp, S.I.
J. Am. Chem. Soc., 2005, 127(20), 7337-7345.
Reductive and Oxidative DNA Damage by Photoactive Platinum(II) Intercalators
Lu, W., Vicic, D.A., Barton, J.K.
Inorg. Chem., 2005, 44(22), 7970-7980.
Structural Uncoupling between Opposing Domains of Oxidized Calmodulin Underlies the Enhanced Binding Affinity and Inhibition of the Plasma Membrane Ca-ATPase
Chen, B., Mayer, M.U., Squier, T.C.
Biochemistry, 2005, 44(12), 4737-4747.
Trans Fatty Acid Derived Phospholipids Show Increased Membrane Cholesterol and Reduced Receptor Activation as Compared To Their Cis Analogs
Niu, S.-L., Mitchell, D.C., Litman, B.J.
Biochemistry, 2005, 44(11), 4458-4465.
Phospholamban Pentamer Quaternary Conformation Determined by In-Gel Fluorescence Anisotropy
Robia, S.L., Flohr, N.C., Thomas, D.D.
Biochemistry, 2005, 44(11), 4302-4311.
Oligomeric State and Mode of Self-Association ofThermotoga maritima Ribosomal Stalk Protein L12 in Solution
Moens, P.D.J., Wahl, M.C., Jameson, D.M.
Biochemistry, 2005, 44(9), 3298-3305.
Dynamic Motion of Helix A in the Amino-Terminal Domain of Calmodulin Is Stabilized upon Calcium Activation
Chen, B., Mayer, M.U., Markillie, L.M., Stenoien, D.L., Squier, T.C.
Biochemistry, 2005, 44(3), 905-914.
Interaction of the 20 kDa and 63 kDa Fragments of Anthrax Protective Antigen: Kinetics and Thermodynamics
Christensen, K.A., Krantz, B.A., Melnyk, R.A., Collier, R.J.
Biochemistry, 2005, 44(3), 1047-1053.
A Detergent-like Mechanism of Action of the Cytolytic Toxin Cyt1A fromBacillus thuringiensis var.israelensis
Manceva, S.D., Pusztai-Carey, M., Russo, P.S., Butko, P.
Biochemistry, 2005, 44(2), 589-597.
Structural Uncoupling between Opposing Domains of Oxidized Calmodulin Underlies the Enhanced Binding Affinity and Inhibition of the Plasma Membrane Ca-ATPase
Chen, B., Mayer, M.U., Squier, T.C.
Biochemistry, 2005, 44(12), 4737-4747.
Reductive and Oxidative DNA Damage by Photoactive Platinum(II) Intercalators
Lu, W., Vicic, D.A., Barton, J.K.
Inorg. Chem., 2005, 44(22), 7970-7980.
Probing the Interior of Peptide Amphiphile Supramolecular Aggregates
Tovar, J.D., Claussen, R.C., Stupp, S.I.
J. Am. Chem. Soc., 2005, 127(20), 7337-7345.
Complex Formation Between Plasmid DNA and Self-Aggregates of Deoxycholic Acid-Modified Chitosan
Lee, K.Y., Kwon, I.C., Jo, W.H., Jeong, S.Y.
Polymer, 2005, 46(19), 8107-8112.
Heterologous Expression, Characterization and Structural Studies of a Hydrophobic Peptide from the HIV-1 p24 Protein
Castilho, P.V., Campana, P.T., Garcia, A.F., Beltramini, L.M., Araújo, A.P.U.
Peptides, 2005, 26(2), 243-249.
Conformation of a Synthetic Antigenic Peptide from HIV-1 p24 Protein Induced by Ionic Micelles
Campana, P.T., Beltramini, L.M., Costa-Filho, A.J., Tonarelli, G., Lottersberger, J., Bianconi, M.L.
Biophysical Chemistry, 2005, 113(2), 175-182.
A Nature of Conformational Changes of Yeast tRNAPhe: High Hydrostatic Pressure Effects
Giel-Pietraszuk, M., Barciszewski, J.
International Journal of Biological Macromolecules, 2005, 37(3), 109-114.
Calcium Activation of the Ca-ATPase Enhances Conformational Heterogeneity between Nucleotide Binding and Phosphorylation Domains
Chen, B., Squier, T. C., Bigelow, D. J.
Biochemistry, 2004, 43(14), 4366-4374.
Conformational Changes within the Cytosolic Portion of Phospholamban upon Release of Ca-ATPase Inhibition
Li, J., Bigelow, D. J., Squier, T. C.
Biochemistry, 2004, 43(13), 3870-3879.
Correlation between Mechanical and Enzymatic Events in Contracting Skeletal Muscle Fiber
Shepard, A., Borejdo, J.
Biochemistry, 2004, 43(10), 2804-2811.
Cholesterol Superlattice Modulates the Activity of Cholesterol Oxidase in Lipid Membranes
Wang, M. M., Olsher, M., Sugar, I. P., Chong, P. L.-G.
Biochemistry, 2004, 43(8), 2159-2166.
Phospholamban Binds in a Compact and Ordered Conformation to the Ca-ATPase
Li, J., Xiong, Y., Bigelow, D. J., Squier, T. C.
Biochemistry, 2004, 43(2), 455-463.
Partitioning of Dual-Lipidated Peptides into Membrane Microdomains: Lipid Sorting vs Peptide Aggregation
Janosch, S., Nicolini, C., Ludolph, B., Peters, C., Volkert, M., Hazlet, T. L., Gratton, E., Waldmann, H., Winter, R.
J. Am. Chem. Soc., 2004, 126(24), 7496-7503.
Direct Detection of Phospholamban and Sarcoplasmic Reticulum Ca-ATPase Interaction in Membranes Using Fluorescence Resonance Energy Transfer
Mueller, B., Karim, C. B., Negrashov, I. V., Kutchai, H., Thomas, D. D.
Biochemistry, 2004, 43(27), 8754-8765.
DNA Charge Transport: Conformationally Gated Hopping through Stacked Domains
O'Neill, M. A., Barton, J. K.
J. Am. Chem. Soc., 2004, 126(37), 11471-11483.
Short-Lived Fluorescence Component of DPH Reports on Lipid-water Interface of Biological Membranes
Konopásek, I., Vecer, J., Strzalka, K., Amler, E.
Chemistry and Physics of Lipids, 2004, 130, 135-144.
A Recombinant Glutamine-Binding Protein fromEscherichia coli: Effect of Ligand-Binding on Protein Conformational Dynamics
Herman, P., Vecer, J., Scognamiglio, V., Staiano, M., Rossi, M., D'Auria, S.
Biotechnol. Prog., 2004, 20(6), 1847-1854.
High Hydrostatic Pressure Perturbs the Interactions between CF0F1 Subunits and Induces a Dual Effect on Activity
Souza, M.O., Creczynski-Pasa, T.B., Scofano, H.M., Gräber, P., Mignaco, J.A.
The International Journal of Biochemistry & Cell Biology, 2004, 36(5), 920-930.
Conformational and Enzymatic Changes of 20S Proteasome of Rat Natural Killer Cells Induced by Mono- and Divalent Cations
Reshetnyak, Y.K., Kitson, R.P., Lu, M., Goldfarb, R.H.
Journal of Structural Biology, 2004, 145(3), 263-271.
Effects of Ethanol on Lipid Bilayers with and without Cholesterol: The Distearoylphosphatidylcholine System
Tran, R., Ho, S., Dea, P.
Biophysical Chemistry, 2004, 110(1-2), 39-47.
Cloning and Characterization of the cDNA for the Brazilian Cratomorphus distinctus Larval Firefly Luciferase: Similarities with European Lampyris noctiluca and Asiatic Pyrocoelia luciferases
Viviani, V.R., Arnoldi, F.G.C., Brochetto-Braga, M., Ohmiya, Y.
Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 2004, 139(2), 151-156.
Characterization of Lecithin: Cholesterol Acyltransferase Expressed in a Human Lung Cell Line
Lane, S.B., Tchedre, K.T., Nair, M.P., Thigpen, A.E., Lacko, A.G.
Protein Expression and Purification, 2004, 36(2), 157-164.
Sequence Specific Fluorescence Detection of Double Strand DNA
Rucker, V.C., Foister, S., Melander, C., Dervan, P.B.
J. Am. Chem. Soc., 2003, 125(5), 1195-1202.
Surface Changes and Role of Buried Water Molecules during the Sulfane Sulfur Transfer in Rhodanese and Azotobacter vinelandii: A Fluorescence Quenching and Nuclear Magnetic Relaxation Dispersion Spectroscopic Study
Fasano, M., Orsale, M., Melino, S., Nicolai, E., Forlani, F., Rosato, N., Cicero, D., Pagani, S., Paci, M.
Biochemistry, 2003, 42, 8550-8557.
Phosphorylation by cAMP-Dependent Protein Kinase Modulates the Structural Coupling between the Transmembrane and Cytosolic Domains of Phospholamban
Li, J., Bigelow, D. J., Squier, T. C.
Biochemistry, 2003, 42(36), 10674-10682.
Evidence for Tryptophan Residues in the Cation Transport Path of the Na+,K+-ATPase
Yudowski, G. A., Bar Shimon, M., Tal, D. M., Gonzalez-Lebrero, R. M., Rossi, R. C., Garrahan, P. J., Beauge, L. A., Karlish, S. J. D.
Biochemistry, 2003, 42(34), 10212-10222.
Quantification of Allosteric Influence of Escherichia coli Phosphofructokinase by Frequency Domain Fluorescence
Pham, A.S., Reinharty, G.D.
Biophys. J., 2003, 85, 656-666.
Fluorescence Resonance Energy Transfer Studies on Anthrax Lethal Toxin
Croney, J.C., Cunningham, K.M., Collier, R.J., Jameson, D.M.
FEBS Letters, 2003, 550, 175-178.
DNA Cross-Linking with Metallointercalator-Peptide Conjugates
Copeland, K.D., Lueras, A.M.K., Stemp, E.D.A., Barton, J.K.
Biochemistry, 2002, 41, 12785-12797.
Structural and Biochemical Characterization of a Fluorogenic Rhodamine-Labeled Malarial Protease Substrate
Blackman, M.J., Corrie, J.E., Croney, J.C., Kelly, G., Eccleston, J.F., Jameson, D.M.
Biochemistry, 2002, 41, 12244-12252.
Lateral Diffusion Coefficients in Membranes Measured by Resonance Energy Transfer and a New Algorithm for Diffusion in Two Dimensions
Kus´ba, J., Li, L., Gryczynski, I., Piszczek, G., Johnson, M., Lakowicz, J.R.
Biophys. J., 2002, 82, 1358-1372.
Time-Resolved Polarization Imaging By Pump-Probe (Stimulated Emission) Fluorescence Microscopy
Buehler, C., Dong, C.Y., So, P.T.C., French, T., Gratton, E.
Biophys. J., 2000, 79, 536-549.
Low Temperature and Pressure Stability of Picornaviruses: Implications for Virus Uncoating
Oliveira, A.C., Ishimaru, D., Gonçalves, R.B., Smith, T.J., Mason, P., Sá-Carvalho, D., Silva, J.L.
Biophys. J., 1999, 76, 1270-1279.
Water Dynamics in Glycosphingolipid Aggregates Studied by LAURDAN Fluorescence
Bagatolli, L.A., Gratton, E., Fidelio, G.D.
Biophys. J., 1998, 75, 331-341.

Environmental Studies

Hg2+ Reacts with Different Components of the NADPH: Protochlorophyllide Oxidoreductase Macrodomains
Solymosi, K., Lenti, K., Mysliwa-Kurdziel, B., Fidy, J., Strzalka, K., Böddi, B.
Plant Biology, 2004, 6, 358-367.
Real-Time Determination of Picomolar Free Cu(II) in Seawater Using a Fluorescence-Based Fiber Optic Biosensor
Zeng, H.-H., Thompson, R.B., Maliwal, B.P., Fones, G. R., Moffett, J.W., Fierke, C.A.
Anal. Chem., 2003, 75(24), 6807-6812.

Nanomaterials & Nanotechnology

Fabrication and Characterization of Planar Plasmonic Substrates with High Fluorescence Enhancement
Szmacinski, H., Bedugu, R., Lakowicz, J.R..
J. Phys. Chem., 2010, 114(49), 21142-21149.
Coordinatively Induced Length Control and Photoluminescence of W18O49 Nanorods
Woo, K., Hong, J., Ahn, J.-P., Park, J.-K., Kim, K.J.
Inorg. Chem., 2005, 44(20), 7171-7174.
Physicochemical Characterizations of Self-Assembled Nanoparticles of Glycol Chitosan-Deoxycholic Acid Conjugates
Kim, K., Kwon, S., Park, J.H., Chung, H., Jeong, S.Y., Kwon, I.C., Kim, I.-S.
Biomacromolecules, 2005, 6(2), 1154-1158.
Preparation and Characterization of Self-Assembled Nanoparticles of Heparin-Deoxycholic Acid Conjugates
Park, K., Kim, K., Kwon, I.C., Kim, S.K., Lee, S., Lee, D.Y., Byun, Y.
Langmuir, 2004, 20(26), 11726-11731.

Pharmaceutical Chemistry

Thermosensitive Poly(organophosphazene) Hydrogels for a Controlled Drug Delivery
Kang, G.D., Cheon, S.H., Khang, G., Song, S.-C.
European Journal of Pharmaceutics and Biopharmaceutics, in press, Available online 9 March 2006.
Polycations Enhance Emulsion-Mediated in Vitro and in Vivo Transfection
Kim, T.W., Chung, H., Kwon, I.C., Sung, H.C., Shin, B.C., Jeon, S.Y.
International Journal of Pharmaceutics, 2005, 295(1-2), 35-45.

Photochemistry & Photobiology

Fluorescence Lifetimes and Spectral Properties of Protochlorophyllide in Organic Solvents in Relation to the Respective Parameters in Vivo
Mysliwa-Kurdziel, B., Kruk, J., Strzalka, K.
Photochemistry and Photobiology, 2004, 79(1), 62-67.
Nanosecond Photoreduction of Cytochrome P450cam by Channel-Specific Ru-diimine Electron Tunneling Wires
Dunn, A.R., Dmochowski, I. J., Winkler, J. R., Gray, H.B.
J. Am. Chem. Soc., 2003, 125(41), 12450-12456.
PsbS-Dependent Enhancement of Feedback De-Excitation Protects Photosystem II from Photoinhibition
Li, X., Muller-Moulë, P., Gilmore, A.M., Niyogi, K.
PNAS, 2002, 99, 15222-15227.

Physical Chemistry

Daunomycin Binding to Detergent Micelles: A Model System for Evaluating the Hydrophobic Contribution to Drug-DNA Interactions
Dignam, J.D., Qu, X., Ren, J., Chaires, J.B.
J. Phys. Chem. B, 2007, 111(39), 11576-11584.
Synthesis, Characterization and Fluorescence Study of Eu(III) Tungstates and Molybdates<
De Farias, R.F, Airoldi, C., Belian, M.F., Alvres, Jr., S.
Journal of Alloys and Compounds, 2006, 419(1-2), 50-53.
Preparative Routes to Luminescent Mixed-Ligand Rhenium(I) Dicarbonyl Complexes
Smithback, J.L., Helms, J.B., Schutte, E., Woessner, S.M., Sullivan, B.P.
Inorg. Chem., 2006, 45(5), 2163-2174.
Detection of Adsorption of Ru(II) and Os(II) Polypyridyl Complexes on Gold and Silver Nanoparticles by Single-Photon Counting Emission Measurements
Glomm, W.R., Moses, S.J., Brennaman, M.K., Papanikolas, J.M., Franzen, S.
J. Phys. Chem. B, 2005, 109(2), 804-810.
Synthesis and Micellar Characteristics of Dendron-PEG Conjugates
Chang, Y., Park, C., Kim, K.T., Kim, C.
Langmuir, 2005, 21(10), 4334-4339.
Nanosecond Photoreduction of Cytochrome P450cam by Channel-Specific Ru-diimine Electron Tunneling Wires
Dunn, A.R., Dmochowski, I.J., Winkler, J.R., Gray, H.B.
J. Am. Chem. Soc., 2003, 125(41), 12450-12456.
Determination of Diffusion Coefficients of Humic Substances by Fluorescence Correlation Spectroscopy: Role of Solution Conditions
Lead, J.R., Starchev, K., Wilkinson, K.J.
Environ. Sci. Technol., 2003, 37(3), 482-487.

Sensors

Long Wavelength Fluorescence Lifetime Standards for Front-Face Fluorometry
McCranor, B.J., Thompson, R.B.
J. Fluoresc., March 2010, 20(2), 435-440.
Modeling of Spherical Fluorescent Glucose Microsensor Systems: Design of Enzymatic Smart Tattoos
Brown, J.Q., McShane, M.J.
Biosens. Bioelectron., 2006, 21(9), 1760-9.
Coordinatively Induced Length Control and Photoluminescence of W18O49 Nanorods
Woo, K., Hong, J., Ahn, J.-P., Park, J.-K., Kim, K.-J.
Inorg. Chem., 2005, 44(20), 7171-7174.
Fatty Acid Sensor for Low-Cost Lifetime-Assisted Ratiometric Sensing Using a Fluorescent Fatty Acid Binding Protein
Bartolome, A., Bardliving, C., Rao, G., Tolosa, L.
Analytical Biochemistry, 2005, 345(1), 133-139.
[Ru(bpy)2(L)]Cl2: Luminescent Metal Complexes That Bind DNA Base Mismatches
Ruba, E., Hart, J. R., Barton, J. K.
Inorg. Chem., 2004, 43(15), 4570-4578.
Short-Lived Fluorescence Component of DPH Reports on Lipid–Water Interface of Biological Membranes
Konopásek, I., Vecer, J., Strzalka, K., Amler, E.
Chemistry and Physics of Lipids, 2004, 130(2) 135-144.
Reorientational Dynamics of Enzymes Adsorbed on Quartz: A Temperature-Dependent Time-Resolved TIRF Anisotropy Study
Czeslik, C., Royer, C., Hazlett, T., Mantulin, W.
Biophysical Journal, 2003, 84(4), 2533-2541.
Synthesis and Characterization of a Sulfhydryl-Reactive Rhenium Metal-Ligand Complex
Dattelbaum, J.D., Abugo, O.O., Lakowicz, J.R.
Bioconjug. Chem., 2000, 11(4), 533-536.

PC1

Biochemistry & Molecular Biology (Membranes, Nucleic Acids, Proteins)

Family of pH (Low) Insertion Peptides for Tumor Targeting.
Weerakkody, D., Moshnikova, A., Thakur, M.S., Moshnikova, V., Daniels, J., Engelman, D.M., Andreev, O.A., Reshetnyak, Y.K.
Proc Natl Acad Sci U S A., 2013, 110(15), 5834-9.
Modulation of the pHLIP Transmembrane Helix Insertion Pathway.
Karabadzhak, A.G., Weerakkody, D., Wijesinghe, D., Thakur, M.S., Engelman, D.M., Andreev, O.A., Markin, V.S., Reshetnyak, Y.K.
Biophys J., 2012, 102(8), 1846-55.
From the Cover: Side-chain Hydrophobicity Scale Derived From Transmembrane Protein Folding Into Lipid Bilayers
Moon, C.P., Fleming, K.G.
Proc. Natl. Acad. Sci. U.S.A., 2011, 108(25), 10174-7.
Specificity in DNA Recognition by a Peptide from Papillomavirus E2 Protein
Faber-Barata, J., Mohana-Borges, R., Lima, L.M. T.R.
FEBS Letters, 2006, 580(8), 1919-1924.
The Asymmetry in the Mature Amino-Terminus of ClpP Facilitates a Local Symmetry Match in ClpAP and ClpXP Complexes
Bewley, M.C., Graziano, V., Griffin, K., Flanagan, J.M.
Journal of Structural Biology, 2006, 153(2), 113-128
Methane Monooxygenase Hydroxylase and B Component Interactions
Zhang, J., Wallar, B.J., Popescu, C.V., Renner, D.B., Thomas, D.D., Lipscomb, J.D.
Biochemistry, 2006, 45(9), 2913-2926.
The SRC-3/AIB1 Coactivator Is Degraded in a Ubiquitin- and ATP-Independent Manner by the REGγ Proteasome
Li, X., Lonard, D.M., Jung, S.Y., Malovannaya, A., Feng, Q., Qin, J., Tsai, S.Y., Tsai, M.-J., O'Malley, B.W.
Cell, 2006, 124(2), 381-392.
Target Structure-Based Discovery of Small Molecules that Block Human p53 and CREB Binding Protein Association
Sachchidanand, Resnick-Silverman, L., Yan, S., Mutjaba, S., Liu, W.-J., Zeng, L., Manfredi J.J., Zhou, M.M.
Chemistry & Biology, 2006, 13(1), 81-90.
Supramolecular Fluorophores for Biological Studies: Phenylene Vinylene-Amino Acid Amphiphiles
Harrington, D.A., Behanna, H.A., Tew, G.N., Claussen, R.C., Stupp, S.I.
Chemistry & Biology, 2005, 12(10), 1085-1091.
Förster Resonance Energy Transfer Measurements Are Consistent with a Helical Bundle Model for Lipid-Free Apolipoprotein
Brouillette, C.G., Dong, W.-J., Yang, Z.W., Ray, M.J., Protasevich, I.I., Cheung, H.C., Engler, J.A.
Biochemistry, 2005, 44(50), 16413-16425.
Probing the Interior of Peptide Amphiphile Supramolecular Aggregates
Tovar, J.D., Claussen, R.C., Stupp, S.I.
J. Am. Chem. Soc., 2005, 127(20), 7337-7345.
Measurements of Internal Distance Changes of the 30 S Ribosome Using FRET with Multiple Donor-Acceptor Pairs: Quantitative Spectroscopic Methods
Majumdar, Z.K., Hickerson, R., Noller, H.F., Clegg, R.M.
Journal of Molecular Biology, 2005, 351(5), 1123-1145.
Acid- and Pressure-Induced (Un)folding of Yeast Glutathione reductase: Competition Between Protein Oligomerization and Aggregation
Morais, A.C.S., Chapeaurouge, A., Ferreira, S.T.
The International Journal of Biochemistry & Cell Biology, 2005, 37(9), 1890-1899.
A Bioactive Titanium Foam Scaffold for Bone Repair
Spoerke, E.D., Murray, N.G., Li, H., Brinson, L.C., Dunand, D.C., Stupp S.I.
Acta Biomaterialia, 2005, 1(5), 523-53.
Effect of Modification of the Length and Flexibility of the Acyl Carrier Protein-Thioesterase Interdomain Linker on Functionality of the Animal Fatty Acid Synthase
Joshi, A.K., Witkowski, A., Berman, H.A., Zhang, L., Smith, S.
Biochemistry, 2005, 44(10), 4100-4107.
Site-Directed Fluorescence Labeling Reveals Differences on the R-Conformer of Glucosamine 6-Phosphate Deaminase of Escherichia coli Induced by Active or Allosteric Site Ligands at Steady State
Sosa-Peinado, A., Gonzalez-Andrade, M.
Biochemistry, 2005, 44(46), 15083-15092.
Separating the Contribution of Translational and Rotational Diffusion to Protein Association
Kuttner, Y.Y., Kozer, N., Segal, E., Schreiber, G., Haran, G.
J. Am. Chem. Soc., 2005, 127(43), 15138-15144.
Reversible Equilibrium Unfolding of Triosephosphate Isomerase from Trypanosoma cruzi in Guanidinium Hydrochloride Involves Stable Dimeric and Monomeric Intermediates
Chanez-Cardenas, M.E., Perez-Hernandez, G., Sanchez-Rebollar, B.G., Costas, M., Vazquez-Contreras, E.
Biochemistry, 2005, 44(32), 10883-10892.
Acyl-Coenzyme A Binding Protein Expression Alters Liver Fatty Acyl-Coenzyme A Metabolism
Huang, H., Atshaves, B.P., Frolov, A., Kier, A.B., Schroeder, F.
Biochemistry, 2005, 44(30), 10282-10297.
Structural and Functional Characterization of Mycobacterium tuberculosis CmtR, a PbII/CdII-Sensing SmtB/ArsR Metalloregulatory Repressor
Wang, Y., Hemmingsen, L., Giedroc, D.P.
Biochemistry, 2005, 44(25), 8976-8988.
Oligomeric State and Mode of Self-Association of Thermotoga maritima Ribosomal Stalk Protein L12 in Solution
Moens, P.D.J., Wahl, M.C., Jameson, D.M.
Biochemistry, 2005, 44(9), 3298-3305.
A Detergent-like Mechanism of Action of the Cytolytic Toxin Cyt1A from Bacillus thuringiensis var. israelensis
Manceva, S.D., Pusztai-Carey, M., Russo, P.S., Butko, P.
Biochemistry, 2005, 44(2), 589-597.
Domain Study of Bacteriophage P22 Coat Protein and Characterization of the Capsid Lattice Transformation by Hydrogen/Deuterium Exchange
Kang, S., Prevelige, Jr., P.E.
Journal of Molecular Biology, 2005, 347(5), 935-948.
Entamoeba histolytica: Inhibition of Cellular Functions by Overexpression of EhGEF1, a Novel Rho/Rac Guanine Nucleotide Exchange Factor
Aguilar-Rojas, A., De Jesús Almaraz-Barrera, M., Krzeminski, M., Robles-Flores, M., Hernández-Rivas, R., Guillén, N., Maroun, R.C., Vargas, M.
Experimental Parasitology, 2005, 109(3), 150-162.
Effect of pH and Ionic Strength on the Cytolytic Toxin Cyt1A: a Fluorescence Spectroscopy Study
Manceva, S.D., Pusztai-Carey, M., Butko, P.
Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 2004, 1699(1-2), 123-130.
Inhibition of Yeast Glutathione Reductase by Trehalose: Possible Implications in Yeast Survival and Recovery from Stress
Sebollela, A., Louzada, P.R., Sola-Penna, M., Sarone-Williams, V., Coelho-Sampaio, T., Ferreira, S.T.
The International Journal of Biochemistry & Cell Biology, 2004, 36(5), 900-908.
Effects of Protein Kinase C Dependent Phosphorylation and a Familial Hypertrophic Cardiomyopathy-Related Mutation of Cardiac Troponin I on Structural Transition of Troponin C and Myofilament Activation
Kobayashi, T., Dong, W.-J., Burkart, E.M., Cheung, H.C., Solaro, R.J.
Biochemistry, 2004, 43(20), 5996-6004.
Conserved Cysteine 126 in Triosephosphate Isomerase Is Required Not for Enzymatic Activity but for Proper Folding and Stability
Gonzalez-Mondragon, E., Zubillaga, R.A., Saavedra, E., Chanez-Cardenas, M.E., Perez-Montfort, R., Hernandez-Arana, A.
Biochemistry, 2004, 43(11), 3255-3263.
Liver Fatty Acid-Binding Protein Colocalizes with Peroxisome Proliferator Activated Receptor and Enhances Ligand Distribution to Nuclei of Living Cells
Huang, H., Starodub, O., McIntosh, A., Atshaves, B.P., Woldegiorgis, G., Kier, A.B., Schroeder, F.
Biochemistry, 2004, 43(9), 2484-2500.
The Biotin Repressor: Modulation of Allostery by Corepressor Analogs
Brown, P.H., Cronan, J.E., Grřtli, M., Beckett, D.
Journal of Molecular Biology, 2004, 337(4), 857-869.
Detection of Tryptophan to Tryptophan Energy Transfer in Proteins
Moens, P.D.J., Helms, M.K., Jameson, D.M.
The Protein Journal, 2004, 23(1), 79-83.
Cdc42 Regulates the Par-6 PDZ Domain through an Allosteric CRIB-PDZ Transition
Peterson, F.C., Penkert, R.R., Volkman, B.F., Prehoda, K.E.
Molecular Cell, 2004, 13(5), 665-676.
Time-resolved Fluorescence Anisotropy Studies Show Domain-specific Interactions of Calmodulin with IQ Target Sequences of Myosin V
Bayley P., Martin S., Browne P., Royer C.
Eur Biophys J., 2003, 32(2), 122-7.
The 2'-O- and 3'-O-Cy3-EDA-ATP(ADP) Complexes with Myosin Subfragment-1 are Spectroscopically Distinct
Oiwa, K., Jameson, D.M., Croney, J.C., Davis, C.T., Eccleston, J.F., Ansonz, M.
Biophys. J., 2003, 84, 634-642.
Persistent Conformational Heterogeneity of Triosephosphate Isomerase: Separation and Characterization of Conformational Isomers in Solution
Moreau, V.H., Rietveld, A.W. M., Ferreira, S.T.
Biochemistry, 2003, 42(50), 14831-14837.
Sterol Carrier Protein-2 Selectively Alters Lipid Composition and Cholesterol Dynamics of Caveolae/Lipid Raft vs Nonraft Domains in L-Cell Fibroblast Plasma Membranes
Atshaves, B.P., Gallegos, A.M., McIntosh, A.L., Kier, A.B., Schroeder, F.
Biochemistry, 2003, 42(49), 14583-14598.
Ablation of the Liver Fatty Acid Binding Protein Gene Decreases Fatty Acyl CoA Binding Capacity and Alters Fatty Acyl CoA Pool Distribution in Mouse Liver
Martin, G.G., Huang, H., Atshaves, B.P., Binas, B., Schroeder, F.
Biochemistry, 2003, 42(39), 11520-11532.
The Mechanism of Ras GTPase Activation by Neurofibromin
Phillips, R.A., Hunter, J.L., Eccleston, J.F., Webb, M.R.
Biochemistry, 2003, 42(13), 3956-3965.
Structural and Biochemical Characterization of a Fluorogenic Rhodamine-Labeled Malarial Protease Substrate
Blackman, M.J., Corrie, J.E., Croney, J.C., Kelly, G., Eccleston, J.F., Jameson, D.M.
Biochemistry, 2002, 41, 12244-12252.
Modulation of Pig Kidney Na+/K+-ATPase Activity by Cholesterol: Role of Hydration
Sotomayor, C.P., Aguilar, L.F., Cuevas, F.J., Helms, M.K., Jameson, D.M.
Biochemistry, 2000, 39, 10928-10935.

High Pressure Cell Measurements

Nanomaterials & Nanotechnology

Size Controlled Nano Meter Phase Structure in Thin Films of Blend Polythiophene Derivatives
Cui, H.-N., Teixeira, V., Zhang, J., Lee, H.
Thin Solid Films, 2006, 515(1), 301-306.
Polymer/Gold Nanoparticle Nanocomposite Light-Emitting Diodes: Enhancement of Electroluminescence Stability and Quantum Efficiency of Blue-Light-Emitting Polymers
Park, J.H., Lim, Y.T., Park, O.O., Kim, J.K., Yu, J.-W., Kim, Y.C.
Chem. Mater., 2004, 16(4), 688-692.
Probing Single-Stranded DNA Conformational Flexibility Using Fluorescence Spectroscopy
Murphy, M.C., Rasnik, I., Cheng, W., Lohman, T.M., Ha, T.
Biophys. J., 2004, 86, 2530-2537.
Effects of Surface Passivation on Silicon Nanoparticle Photoluminescence
Harwell, D.E., Croney, J.C., Qin, W., Thornton, J.T., Day, J.H., Hajime, E.K., Jameson, D.M.
Chemistry Letters, 2003, 32(12), 1194-1195.

Pharmaceutical Chemistry

A High-Throughput Resonance Energy Transfer Assay for Staphylococcus aureus DNA Ligase
Benson, E.L., Tomich, P.K., Wolfe, M.L., Choi, G.H., Hagadorn, J.C., Mutchler, V.T., Garlick, R.L.
Analytical Biochemistry, 2004, 324(2), 298-300.
Kinase Inhibitors: Not Just for Kinases Anymore
McGovern, S.L., Shoichet, B.K.
J. Med. Chem., 2003, 46(8), 1478-1483.

Physical Chemistry

On the Use of Theoretical Tools in the Study of Photophysical Properties of the New Eu(fod)3 Complex with Diphenbipy
Dos Santos, E.R., dos Santos, M.A., Freire, R.O., Júnior, S.A., Barreto, L.S., de Mesquita, M.E.
Chemical Physics Letters, 2006, 418(4-6), 337-341.
Spectroscopic Properties of the Eu(fod)3Phen–NO Incorporated Carboxylate Glass
Beltrão, M.A., Santos, M.L., Mesquita, M.E., Barreto, L.S., da Costa, Jr., N.B., Freire, R.O., dos Santos, M.A.C.
Journal of Luminescence, 2006, 116(1-2), 132-138.
White Light Emission From a Polymer Bilayer by Incomplete Cascade Energy Transfer
Park, J.H., Park, O.O., Kim, J.K., Yu, J.-W., Kim, Y.C.
Current Applied Physics, 2006, 6(4), 640-643.
White Polymer Light-Emitting Devices From Ternary-Polymer Blend with Concentration Gradient
Park, J.H., Lee, T.-W., Kim, Y.C., Park, O.O., Kim, J.K.
Chemical Physics Letters, 2005, 403(4-6), 293-297.
α-Crystallin Binding in Vitro to Lipids from Clear Human Lenses
Grami, V., Marrero, Y., Huang, L., Tang, D., Yappert, M.C., Borchman, D.
Experimental Eye Research, 2005, 81(2), 138-146.
Remote and Adjacent Excited-State Electron Transfer At TiO2 Interfaces Sensitized to Visible Light with Ru(II) Compounds
Liu, F., Meyer, G. J.
Inorg. Chem., 2005, 44(25), 9305-93.
Spectroscopic Studies of the Intermolecular Interactions of Congo Red and Tinopal CBS with Modified Cellulose Fibers
Yamaki, S.B., Barros, D.S., Garcia, C.M., Socoloski, P., Oliveira, Jr., O.N., Atvars, Langmuir, T.D.Z.
2005, 21(12), 5414-5420.
Diffusion of a Single Component in a Binary Polymer Blend Upon Annealing Monitored by Fluorescence Microspectroscopy
De Andrade, M.L., Atvars, T.D.Z.
Macromolecules, 2004, 37(25), 9626-9630.
Photophysical Study in Blends of Poly(alkyl methacrylate-Co-styrene)/Polystyrene
De Andrade, M.L., Atvars, T.D.Z.
Macromolecules, 2004, 37(24), 9096-9108.
Optoelectronic and Photophysical Properties of Polyfluorene Blends as Side-Chain Length and Shape
Byun, H. Y., Chung, I. J., Shim, H.-K., Kim, C. Y.
Macromolecules, 2004, 37(18), 6945-6953.
Hole-Transporting Property of a Chemically Hybridized Poly(vinylcarbazole)-Fullerene
Park, J.H., Park, O.O., Kim, J., Yu, J.-W., Kim, J.K., Kim, Y.C.
Current Applied Physics, 2004, 4(6), 659-662.
Surface Treatment to Enhance the Quantum Efficiency of Semiconductor Nanocrystals
Jang, E., Jun, S., Chung, Y., Pu, L.
J. Phys. Chem. B., 2004, 108(15), 4597-4600.
Dynamic and Static Fluorescence Spectroscopy Applied to Miscibility of Poly(n-butyl methacrylate-co-styrene) with Polystyrene and Morphological Analysis by Epifluorescence Microscopy
De Andrade, M.L., Atvars, T.D.Z.
J. Phys. Chem. B., 2004, 108(13), 3975-3984.
Photo and Electroluminescence Studies of Poly(methyl methacrylate-co-9-anthryl methyl methacrylate)
De Deus, J.F., Andrade, M.L., Atvars, T.D.Z., Akcelrud, L.
Chemical Physics, 2004, 297(1-3), 177-186.
The Effects of Alkyl Side-Chain Length and Shape of Polyfluorenes on the Photoluminescence Spectra and the Fluorescence Lifetimes of Polyfluorene Blends with Poly(n-vinylcarbazole)
Byun, H.Y., Chung, I.J., Shim, H.-K., Kim, C.Y.
Chemical Physics Letters, 2004, 393(1-3), 197-203.
Photophysical Study of a Conjugated-non-Conjugated PPV-Type Electroluminescent Copolymer
Machado, A.M., Da Motta Neto, J.D., Cossiello, R.F., Atvars, T.D.Z., Ding, L., Karasz, F.E., Akcelrud, L.
Polymer, 2005, 46(8), 2452-2460.
Enhanced Light Output in Bilayer Light-Emitting Diodes with Film Thickness Variations
Park, J.H., Lee, K.-J., Park, O.O., Yu, J.-W., Kim, Y.C., Kim, J.K.
Chemical Physics Letters, 2004, 386 (1-3),101-104.
Orbital Control of the Color and Excited State Properties of Formylated and Fluorinated Derivatives of Azulene
Shevyakov, S.V., Li, H., Muthyala, R., Asato, A.E., Croney, J.C., Jameson, D.M., Liu, R.S.H.
J. Phys. Chem. A., 2003, 107(18), 3295-3299.
Immobilized Particle Arrays: Coalescence of Planar- and Suspension-Array Technologies
Stevens, P.W., Wang, C. H. J., Kelso, D.M.
Anal. Chem., 2003, 75(5), 1141-1146.

Sensors

Individual Metal Ligands Play Distinct Functional Roles in the Zinc Sensor Staphylococcus aureus CzrA
Pennella, M.A., Arunkumar, A.I., Giedroc, D.P.
Journal of Molecular Biology, 2006, 356(5), 1124-1136.
Structural Insights into Homo- and Heterotropic Allosteric Coupling in the Zinc Sensor S. aureus CzrA from Covalently Fused Dimers
Lee, S., Arunkumar, A.I., Chen, X., Giedroc, D.P.
J. Am. Chem. Soc., 2006, 128(6), 1937-1947.

Alba

Biochemistry

mMAPS: A Flow-Proteometric Technique to Analyze Protein-Protein Interactions in Individual Signaling Complexes
Chou, C.-K., Lee, H.-H., Tsou, P.-H., Chen, C.-T., Hsu, J.-M., Yamaguchi, H., Wang, Y.-N., Lee, H.-J., Hsu, J. L., Lee, J.-F., Kameoka, J., Hung, M.-C.
Sci. Signal., 2014, 7(315), rs1 .
Unraveling Transcription Factor Interactions with Heterochromatin Protein 1 Using Fluorescence Lifetime imaging Microscopy and Fluorescence Correlation Spectroscopy
Siegel, A.P., Hays, N.M., Day, R.N.
J. Biomed. Opt., 2013, 18(2).
Chromophore Maturation and Fluorescence Fluctuation Spectroscopy of Fluorescent Proteins in a Cell-free Expression System.
Macdonald, P.J.1., Chen, Y., Mueller, J.D.
Anal Biochem., 2012, 421(1), 291-8.
Monitoring Biosensor Activity in Living Cells with Fluorescence Lifetime Imaging Microscopy
Hum, J.M., Siegel, A.P., Pavalko, F.M., Day, R.N.
Int. J. Mol. Sci., 2012, 13, 14385-14400.
HIV-1 Nef Binds a Subpopulation of MHC-I throughout Its Trafficking Itinerary and Down-regulates MHC-I by Perturbing Both Antegrograde and Retrograde Trafficking
Yi, L., Rosales, T., Rose, J.J., Chaudhury, B., Knutson, J.R., Venkatesan, S.
J Biol Chem, 2010, 285(40), 30884-30905.
Familial Hypertrophic Cardiomyopathy Can Be Characterized by a Specific Pattern of Orientation Fluctuations of Actin Molecules
Borejdo, J., Szczesna-Cordary, D., Muthu, P., Calander, N.
Biochemistry, 2010, 49, 5269-5277.
Estrogen Receptor Ineractions and Dynamics Monitored in Live Cells by Fluorescence Cross-Correlation Spectroscopy
Savatier, J., Jalaguier, S., Ferguson, M.L., Cavaille`s, V., Royer, C.A.
Biochemistry, 2010, 49, 772-781.
Monomer-Dimer Equilibrium in Glutathione Transferases: A Critical Re-Examination
Fabrini, R., De Luca, A., Stella, L., Mei, G., Orioni, B., Ciccone, S., Federici, G., Lo Bello, M., Ricci, G.
Biochemistry, 2009, 48, 10473-10482.
Fluorescence Correlation Spectroscopy of Phophatidylinositol-specific Phospholipase C Monitors the Interplay of Substrate and Activator Lipid Binding
Pu, M., Roberts, M.F., Gershenson, A.
Biochemistry, 2009, 48(29), 6835-6845.
Correlation of Vesicle Binding and Phospholipid Dynamics with Phospholipase C Activity: Insights Into Phosphatidycholine Activation and Surface Dilution Inhibition
Pu, M., Fang, X., Redfield, A.G., Gershenson, A., Roberts, M.F.
J. of Biol. Chem., 2009, 284(24), 16099-16107.
A Fluorescent Mutant of the NM Domain of the Yeast Prion Sup35 Provides insight into Fibril Formation and Stability
Palhano, F.L., Rocha, C.B., Bernadino, A., Weissmuller, G., Masuda, C.A., Montero-Lomeli, M., Marco Gomes, A., Chien, P., Fernandes, P.M.B., Foguel, D.
Biochemistry, 2009, 48, 6811-6823.
Applications of Dual-Color Fluorescence Cross-Correlation Spectroscopy in Antibody Binding Studies
Ruan, Q., Tetin, S.Y.
Anal. Biochem., 2008.
Endothelial Adhesion Receptors Are Recruited to Adherent Leukocytes by Inclusion in Preformed Tetraspanin Nanoplatforms
Barreiro, O., Zamai, M., Yáńez-Mó, M., Tejera, E., López-Romero, P., Monk, P.N., Gratton, E., Caiolfa, V.R., Sánchez-Madrid, F.
J. Cell Biol., 2008, 183(3), 527-542.
Determining the Stoichiometry of Protein Heterocomplexes in Living Cells With Fluorescence Fluctuation Spectroscopy.
Chen, Y.1., Müller, J.D.
Proc Natl Acad Sci U S A., 2007, 104(9), 3147-52.
Fructose-1,6-bisphosphate Acts Both as an Inducer and as a Structural Cofactor of the Central Glycolytic Genes Repressor (CggR)
Zorrilla, S., Chaix, D., Ortega, A., Alfonso, C., Doan, T., Margeat, E., Rivas, G., Aymerich, S., Declerck, N., Royer, C.A.
Biochemistry, 2007, 46(51), 14996-15008.
Escherichia coli Ribosomal Protein L20 Binds as a Single Monomer to its Own mRNA Bearing Two Potential Binding Sites
Allemand, F., Haentjens, J., Chiaruttini, C., Royer, C., Springer, M.
Nucleic Acids Research, 2007, 35(9), 3016-3031.
Monomer Dimer Dynamics and Distribution of GPI-Anchored uPAR are Determined by Cell Surface Protein Assemblies
Caiolfa, V.R., Zamai1, M., Malengo, G., Andolfo, A., Madsen, C.D., Sutin, J., Digman, M.A., Gratton, E., Blasi1, F., Sidenius, N.
J. Cell Biol., 2007, 179, 1067-1082.
Interactions of Two Monoclonal Antibodies with BNP: High Resolution Epitope Mapping Using Fluorescence Correlation Spectroscopy
Tetin, S.Y., Ruan, Q., Saldana, S.C., Pope, M.R., Chen, Y., Wu, H., Pinkus, M.S., Jiang, J., Richardson, P.L.
Biochemistry, 2006, 45(47), 14155-65.
Effects of Protein-Ligand Associations on the Subunit Interactions of Phosphofructokinase from B. stearothermophilus
Quinlan, R.J., Reinhart, G.D.
Biochemistry, 2006, 45, 11333-11341.
Quantitative Detection of the Ligand-dependent Interaction Between the Androgen Receptor and the Co-activator, Tif2, in Live Cells Using Two Color, Two Photon Fluorescence Cross-correlation Spectroscopy
Rosales, T., Georget, V., Malide, D., Smirnov, A., Xu, J., Combs C., Knutson, J.R., Nicolas, J.-C., Royer, C.A.
Eur. Biophys. J., 2006.
The Nuclear Receptor Coactivator PGC-1α Exhibits Modes of Interaction with the Estrogen Receptor Distinct From those of SRC-1
Bourdoncle, A., Labesse, G., Margueron, R., Castet, A., Cavaillčs, V., Royer, C.A.
J. Mol. Biol., 2005, 347, 921-934.
Phosphoinositide Specificity of and Mechanism of Lipid Domain Formation by Annexin A2-p11 Heterotetramer
Gokhale, N.A., Abraham, A., Digman, M.A., Gratton, E., Cho, W.
J. Biol. Chem., 2005, 280(52), 42831-42840.
Vesicle Encapsulation Studies Reveal that Single Molecule Ribozyme Heterogeneities Are Intrinsic
Okumus, B., Wilson, T.J., Lilley, D.M.J., Ha, T.
Biophys. J., 2004, 87, 2798-2806.
Pleckstrin Homology Domain Diffusion in Dictyostelium Cytoplasm Studied Using Fluorescence Correlation Spectroscopy
Ruchira, Hink, M.A., Bosgraaf, L., Van Haastert, P.J.M., Visser, A.J.W.G.
The Journal of Biological Chemistry, 2004, 279(11), 10013-10019.
Polarized Fluorescence Correlation Spectroscopy of DNA-DAPI Complexes
Barcellona, M.L., Gammon, S., Hazlett, T., Digman, M.A., Gratton, E.
Microscopy Research and Techniques, 2004, 65, 205-217.
Probing Protein Oligomerization in Living Cells With Fluorescence Fluctuation Spectroscopy.
Chen, Y.1., Wei, L.N., Müller, J.D.
Proc Natl Acad Sci U S A., 2003, 100(26), 15492-7.
Segregation of Saturated Chain Lipids in Pulmonary Surfactant Films and Bilayers
Nag, K., Pao, J.-S., Harbottle, R.R., Possmayer, F., Petersen, N.O., Bagatolli, L.A.
Biophys. J., 2002, 82, 2041-2051.
Molecular Heterogeneity of O-Acetylserine Sulfhydrylase by Two-Photon Excited Fluorescence Fluctuation Spectroscopy
Chirico, G., Bettati, S., Mozzarelli, A., Chen, Y., Müller, J.D., Gratton, E.
Biophys. J., 2001, 80, 1973-1985.

Diagnostics & Sensing

Determining Antibody Stoichiometry Using Time-Integrated Fluorescence Cumulant Analysis
Skinner, J.P., Wu, B., Mueller, J.D., Tetin, S.Y.
J. Phys. Chem. B, 2011, 115, 1131-1138.
Application of Fluorescence Correlation Spectroscopy to Hapten-Antibody Binding
Hazlett, T.L., Ruan, Q., Tetin, S.Y.
Methods in Molecular Biology, 2005, 305, 415-438.
Antibodies in Diagnostic Applications
Tetin, S.Y., Stroupe, S.D.
Current Pharmaceutical Biotechnology, 2004, 5, 9-16.
Fluorescence Correlation Spectroscopy Assay for Gliadin in Food
Varriale, A., Rossi, M., Staiano, M., Terpetschnig, E., Barbieri, B., Rossi, M., D'Auria, S.
Anal Chem. 2007, 79(12), 4687-4689.

Nanomaterials & Surface Physics

Interleaflet Diffusion Coupling When Polymer Adsorbs onto One Sole Leaflet of a Supported Phospholipid Bilayer
Zhang, L., Granick S.
Macromolecules, 2007, 40, 1366-1368.
How to Stabilize Phospholipid Liposomes (Using Nanoparticles)
Zhang, L., Granick, S.
Nano Lett., 2006(6), 4, 694-698.
Slaved Diffusion in Phospholipid Bilayers
Zhang, L., Granick, S.
PNAS, 2005(102), 26, 9118-9121.
How Confined Lubricants Diffuse During Shear
Mukhopadyay, A., Bae, S.C., Zhao, J., Granick, S.
Physical Review Letters, 2004, 93, 236105.
Polymer Lateral Diffusion at the Solid-Liquid Interface
Zhao, J., Granick, S.
J. Am. Chem. Soc., 2004, 126, 6242-6243.
Trapped Brownian Motion in Single- and Two-Photon Excitation Fluorescence Correlation Experiments
Chirico, G., Fumagalli, C., Baldini, G.
J. Phys. Chem. B, 2002, 106, 2508-2519.

N&B (Number and Brightness)

Reconciling Molecular Regulatory Mechanisms with Noise Patterns of Bacterial Metabolic Promoters in Induced and Repressed States
Ferguson, M.L., Le Coq, D., Jules, M., Aymerich, S., Ovidiu., R., Declerck, N., Royer, C.A.
PNAS, 2012, 109(1), 155-160.
Absolute Quantification of Gene Expression in Individual Bacterial Cells Using Two-Photon Fluctuation Microscopy
Ferguson, M.L., Le Coq, D., Jules, M., Aymerich, S., Declerck, N., Royer, C.A.
Anal Biochem., 2011, 419, 250-259.

Particle Tracking

Efficient Parallel Levenberg-Marquardt Model Fitting Towards Real-Time Automated Parametric Imaging Microscopy
Zhu, X., Zhang, D.
PLoS One., 2013, 8(10), e76665.
Nanometer-Scale Optical Imaging of Collagen Fibers Using Gold Nanoparticles
Chen, B., Estrada, L.C., Hellriegel, C., Gratton, E.
Biomedical Optics Express, 2011(2), 3, 511-519.

Photon Counting Histogram

Characterization of Brightness and Stoichiometry of Bright Particles by Flow-fluorescence Fluctuation Spectroscopy.
Johnson, J.1., Chen, Y., Mueller, J.D.
Biophys J., 2010, 99(9), 3084-92.
Fluorescence Correlation Spectroscopy and Photon Counting Histogram on Membrane Proteins: Functional Dynamics of the Glycosylphosphatidylinositol-Anchored Urokinase Plasminogen Activator Receptor
Malengo, G., Andolfo, A., Sidenius, N., Gratton, E., Zamai, M., Caiolfa, V.R.
J. Biomed. Opt., 2008, 13(3), 031215.
Unraveling Protein-Protein Interactions in Living Cells with Fluorescence Fluctuation Brightness Analysis
Chen, Y., Wei, L.-N., Müller, J.D.
Biophys. J., 2005, 88, 4366-4377.
Dual-Color Photon-Counting Histogram
Chen, Y., Tekmen, M., Hillesheim, L., Skinner, J., Wu, B., Müller, J.D.
Biophys. J., 2005, 88, 2177-2192.

Plasmonics

Imaging of Protein Secretion from a Single Cell Using Plasmonic Substrates
Szmacinski, H., Toshchakov, V., Piao, W., Lakowicz, J.R.
BioNanoSci., 2013, 3(1), 30-36.

General Theory

Confocal Fluctuation Spectroscopy and Imaging
Földes-Papp, Z., Liao, S.-C.J., You, T., Terpetschnig, E., Barbieri, B.
Current Pharmaceutical Biotechnology, 2010, 11, 639-653.
Fluorescence Fluctuation Spectroscopy: Ushering in a New Age of Enlightenment for Cellular Dynamics
Jameson, D.M., Ross, J.A., Albanesi, J.P.
Biophys. Rev., 2009.

Single Molecule Studies and Theory

Measurements of Single Molecules in Solution and Live Cells Over Longer Observation Times Than Those Currently Possible: The Meaningful Time
Földes-Papp, Z.
Curr. Pharm. Biotechnol., 2013, 14.
Fluorescence Molecular Counting for Single-Molecule Studies in Crowded Environment of Living Cells without and with Broken Ergodicity
Földes-Papp, Z., Baumann, G.
Curr. Pharm. Biotechnol., 2011, 12(5), pp. 824-833.
Single Actomyosin Motor Interactions in Skeletal Muscle
Földes-Papp, Z., Liao, S.-C., Barbieri, B., Gryczynski Jr., K., Luchowski, R., Gryczynski, Z., Gryczynski, I., Borejdo, J., You, T.
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, May 2011, 1813(5), 858-866.
Meaningful Interpretation of Subdiffusive Measurements in Living Cells (Crowded Environment) by Fluorescence Fluctuation Microscopy
Baumann, G., Place, R.F., Földes-Papp, Z.
Current Pharmaceutical Biotechnology, 2010, 11, 527-543.
Anomalous Behavior in Length Distributions of 3D Random Brownian Walks and Measured Photon Count Rates Within Observation Volumes of Single-Molecule Trajectories in Fluorescence Fluctuation Microscopy
Baumann, G., Gryczynski, I., Földes-Papp, Z.
Optics Express, 2010, 18(17), 17883-17896.
Getting High on Single Molecule Biophysics
Block, S.M.
Current Pharmaceutical Biotechnology, 2009, 10(5), 464-466.
Reducing Background Contributions in Fluorescence Fluctuation Time-Traces for Single-Molecule Measurements in Solution
Földes-Papp, Z., Liao, S.-C.J., You, T., Barbieri, B.
Current Pharmaceutical Biotechnology, 2009, 10, 532-542.
Fluorescence Fluctuation Spectroscopic Approaches to the Study of a Single Molecule Diffusing in Solution and a Live Cell without Systemic Drift or Convection: A Theoretical Study
Földes-Papp, Z.
Current Pharmaceutical Biotechnology, 2007, 8, 261-273.
Mobility and Distribution of Replication Protein A in Living Cells at Single Molecule Level
Braet, C., Stephan, H., Dobbie, I., Togashi, D., Ryder, A.G., Földes-Papp, Z., Lowndes, N., Nasheuer., H.P.
Experimental & Molecular Pathology, 2007, 82(2), 156-62.
"True" Single-Molecule Molecule Observations by Fluorescence Correlation Spectroscopy and Two-Color Fluorescence Cross-correlation Spectroscopy
Földes-Papp, Z.
Experimental and Molecular Pathology, 2007, 82, 147-155.
What It Means to Measure a Single Molecule in a Solution by Fluorescence Fluctuation Spectroscopy
Földes-Papp, Z.
Experimental and Molecular Pathology, 2006, 80, 209-218.
How the Molecule Number Is Correctly Quantified in Two-Color Fluorescence Cross-Correlation Spectroscopy: Corrections for Cross-Talk and Quenching in Experiments
Földes-Papp, Z.
Current Pharmaceutical Biotechnology, 2005, 6, 437-444.
Single-Phase Single-Molecule Fluorescence Correlation Spectroscopy (SPSM-FCS)
Földes-Papp, Z., Baumann, G., Kinjo, M., Tamura, M.
Encyclopedia of Medical Genomics and Proteomics, 2005, 1-7.

Super-resolution, Nanoimaging

Capturing Directed Molecular Motion in the Nuclear Pore Complex of Live Cells
Cardarelli, F., Lanzano, L., Gratton, E.
PNAS, 2012, 109(25), 9863-9868.
Nanometer-scale Imaging by the Modulation Tracking Method
Lanzano, L., Digman, M.A., Fwu, P., Giral, H., Levi, M., Gratton, E.
J. Biophotonics, 2011, 4(6), 415-424.

OxiplexTS

Neonatal Applications

  Noninvasivasive monitoring of red blood cell transfusion in very low birthweight infants using diffuse optical spectroscopy.
A. Cerussi, R. Van Woerkom, F. Waffarn and B. Tromberg.
J. Biomed. Optics: 10(5), 2005
  Noninvasivasive monitoring of hemodynamic stress using quantitative near-infrared frequency-domain photon migration spectroscopy.
Tuan H. Pham, R. Horniung, H. P. Ha, T. Burney, D. Serna, L. Powell, M. Brenner and B. Tromberg.
J. Biomed. Optics: 7(1), 34-44, 2002

Neurovascular Surgery - Anesthesiology

  Detection of cerebral ischemia in neurovascular surgery using quantitative frequency-domain near-infrared spectroscopy
Mateo Calderon-Arnulphi, MD; Ali Alaraj, MD; sepideh amin-hanjani, MD; william w. mantulin, Ph.d.,2 chiara m. polzonetti, MS; Enrico Gratton, PhD;
Fady t. Charbel, MD; J Neurosurg 106:283-290, 2007
Frequency domain near-infrared spectroscopy technique in the assessment of brain oxygenation: A validation study in live subjects and cadavers.
Gatto R, Hoffman W, Mueller M, Flores A, Valyi-Nagy T, Charbel FT.
J Neurosci Methods. 2006 May 23; [Epub ahead of print]
  Brain Oxyhemoglobin Stimulation during Intubation
William E. Hoffman, Ph.D., Rodolfo Gatto, M.D., Verna L. Baughman, M.D., Fady Charbel, M.D
Proceedings of American Society of Anesthesiology: A1034: October 14-18, 2006
  Is Outcome in Neurosurgery Related to Brain Hypoxia?
Verna L. Baughman, M.D., Onn Paisansathan, M.D., William E. Hoffman, Ph.D., Rodolfo Gatto, M.D., Fady Charbel, M.D.
Proceedings of American Society of Anesthesiology: A55: October 14-18, 2006
  Quantitative Evaluation of Dexmedetomidine Effects on Regional Brain Tissue Oxygenation
Rodolfo G. Gatto, M.D., William Hoffman, Ph.D., Verna Baughman, M.D., Fady T. Charbel, M.D.
Proceedings of American Society of Anesthesiology: A198: October 14-18, 2006
  Bedside Evaluation of Cerebral Autoregulation Using Frequency Domain Near-Infrared Spectroscopy.
Mateo Calderon-Arnulphi, MD; Ali M. Alaraj, MD; Rodolfo G. Gatto, MD; Hrachya Nersesyan, MD; William Mantulin, PhD; Antonios Michalos, MD; Enrico Gratton, PhD; Fady T. Charbel, MD.
55th annual meeting. Congress of Neurological Surgeons October8-13, 2005
  Prediction of Cerebral Ischemia in Neurovascular Surgery.
Mateo Calderon-Arnulphi, MD; Gatto Rodolfo, MD; Ali Alaraj, MD; Hrachya Nersesyan, MD; William Mantulin, PhD; Antonios Michalos, MD; Enrico Gratton , PhD; Fady T. Charbel, MD.
55th annual meeting. Congress of Neurological Surgeons October8-13, 2005
  Changes in oxygenation and hemodynamics in the human head assessed by frequency-domain multi-distance NIRS.
Michalos, A., M. Calderon, L. P. Safonova, R. Gupta, W. W. Mantulin, E. Gratton.
Optical Society of America Biomedical Topics: FE7, 17-19, 2004

Brain Studies and Applications in Medicine and Surgery

  Do women see things differently than men do?
Jausovec, N., Jausovec, K.
NeuroImage (2008), doi:10.1016/j.neuroimage.2008.11.013
Noninvasive monitoring of red blood cell transfusion in very low birthweight infants using diffuse optical spectroscopy.
Cerussi A, Van Woerkom R, Waffarn F, Tromberg B.
J Biomed Opt. 2005 Sep-Oct;10(5):051401. PMID: 16292938
Transcranial Doppler and Near-Infrared Spectroscopy Can Evaluate the Hemodynamic Effect of Carotid Artery Occlusion
Vernieri F, Tibuzzi F, Pasqualetti P, Rosato N, Passarelli F, Rossini PM, Silvestrini M.
Stroke. 2004 Jan;35(1):64-70. Epub 2003 Dec 18 PMID: 14684777
  Bilateral near-infrared monitoring of the cerebral concentration and oxygen-saturation of hemoglobin during right unilateral electro-convulsive therapy.
F. Fabbri, M. E. Henry, P. F. Renshaw, S. Nadgir, B. L. Ehrenberg, M. A. Franceschini, and S. Fantini.
Brain Research 99: 193-204, 2003
  Non-invasive determination of optical properties of adult brain with frequency domain near-infrared spectroscopy.
Choi, J.H, M. Wolf, U. Wolf, C. Polzonetti, L.P. Safonova, R. Gupta, A. Michalos, W.W. Mantulin,  V. Toronov, D.M. Hueber and E. Gratton.
Optical Society of America Biomedical Topics: SuD33, 144-147, 2002
  Non-invasive and quantitative near-infrared hemoglobin spectrometry in the piglet brain during hypoxic stress, using a frequency-domain multi-distance instrument.
D. M. Hueber; M A. Franceschini; H. Y. Ma; Q. Zhang; J. R. Ballesteros; S. Fantini; D. Wallace; Ntziachristos; B. Chance.
Phys. Med. Biol. 4:, 41-42, 2001.
  Investigation of human brain hemodynamics by simultaneous near-infrared spectroscopy and functional magnetic resonance imaging.
Toronov, V., A .Webb, J.H. Choi, M. Wolf, A. Michalos, E. Gratton and D. Hueber.
Med Phys; 28(4): 521-7, 2001
  Study of local cerebral hemodynamics by frequency-domain near-infrared spectroscopy and correlation with simultaneously acquired functional magnetic resonance imaging.
Vladislav Toronov, Andrew Webb, Jee Hyun Choi, Martin Wolf, Larisa Safonova, Ursula Wolf, and Enrico Gratton
Optics Express 9(8): 417-427, 2001
  Monitoring Brain Activity Using Near-Infrared Light
S. Fantini, P. Aggarwal, K. Chen, and M. A. Franceschini
American Laboratory 33(20):15-17, 2001
Cerebral Hemodynamics Measured by Near-Infrared Spectroscopy at Rest and During Motor Activation
M. A. Franceschini, S. Fantini, V. Toronov, M. E. Filiaci, E. Gratton
OSA In Vivo Optical Imaging Workshop, A. Gandjbakhche ed., (Optical Society of America, Washington, DC 2000), 73-80, 2000.
  Correlation between oxy-hemoglobin and deoxy-hemoglobin concentration changes in the visual and motor cortex during stimulation and a review of fast functional changes: A near-infrared spectroscopy study.
Wolf, M., U. Wolf, V. Toronov, A. Michalos, L.A. Paunescu, J.H. Choi and E. Gratton.
Proc. 28th Ann Mtg International Society on Oxygen Transport to Tissue (ISOTT), Ed. B. Oeseburg, Pabst Sci Pub; p:1, 2000
  Near-infrared study of fluctuations in cerebral hemodynamics during rest and motor stimulation: temporal analysis and spatial mapping.
Toronov, V., M.A. Franceschini, M. Filiaci, S. Fantini, M. Wolf, A. Michalos and E. Gratton.
Med. Phys. 27(4): 801-815, 2000
  Maps of cerebral hemoglobin concentration changes obtained by near-infrared spectroscopy. Characterization of phase shifts among locations
Wolf, M., V. Toronov, U. Wolf, L.A. Paunescu, A. Michalos and E. Gratton.
Optical Society of America Biomedical Topics: TuF6, 416-418, 2000
  Evaluation of Vascular Steal with Near Infrared Spectroscopy.
Choudhury D, Levi M, Fennelly P.
J Am Soc Nephrol, A1028, 1999
Near infrared spectroscopy and transcranial Doppler in monohemispheric stroke.
Vernieri F, Rosato N, Pauri F, Tibuzzi F, Passarelli F, Rossini PM.
Eur Neurol. 1999;41(3):159-62. PMID: 10202248
  Measurements of Scattering and Absorption Changes in Muscle and Brain.
E. Gratton, S. Fantini, M. A. Franceschini, G. Gratton, and M. Fabiani.
Phil. Trans. R. Soc. of Lond. B 35 727-735, 1997.
Brain oxygenation monitoring during cardiopulmonary bypass by near infrared spectroscopy.
De Blasi RA, Almenrader N, Ferrari M.
Adv Exp Med Biol. 1997;413:97-104 PMID: 9238490
  Cerebral and muscle oxygen saturation measurement by frequency-domain near-infrared spectrometer.
De Blasi, R.A., Fantini, S., Franceschini, M.A., Ferrari, M., and Gratton, E.
Med Biol Eng Comput 33, 228-230 (1995).
  Cerebral and muscle oxygen saturation measurement by a frequency-domain near-infrared spectroscopic technique.
Ferrari, M., De Blasi, R.A., Fantini, S., Franceschini, M.A., Barbieri, B., Quaresima, V., and Gratton, E.
Proc. of SPIE, Vol. 2389, (1995), pp. 868-874.

Brain Imaging (slow signals) on humans

  Functional frequency domain near-infrared spectroscopy detects fast neuronal signal in the motor cortex.
Wolf, M., U. Wolf, J.H. Choi, R. Gupta, L.P. Safonova, L. A. Paunescu, A. Michalos and E. Gratton.
Neuroimage 17: 1868-1875, 2002
  Different time evolution of oxy-hemoglobin and deoxy-hemoglobin correlation changes in the visual and motor cortices during functional stimulation: A near-infrared spectroscopy study.
Wolf, M., U. Wolf, V. Toronov, A. Michalos, L. A. Paunescu, J.H. Choi and E. Gratton.
Neuroimage 16: 704-712, 2002
Scalp-recorded optical signals make sound processing in the auditory cortex visible?
Rinne T, Gratton G, Fabiani M, Cowan N, Maclin E, Stinard A, Sinkkonen J, Alho K, Naatanen R.
Neuroimage. 1999 Nov;10(5):620-4. No abstract available. PMID: 10547339
  Real time optical imaging and spectroscopy of brain ischemia and hemorrhage.
Stankovic, M., Maulik, D., Stubblefield, P., Rosenfeld, W., Gratton, E., Franceschini, M., and Fantini, S.
Proc. of SPIE , Vol. 3597, (1999), pp. 676-684.
  Real time optical imaging and spectroscopy of brain ischemia and hemorrhage in neonatal piglets.
Stankovic, M., Maulik, D., Rosenfeld, W., Stubblefield, P., Kofinas, A., Drexler, S., Nair, R., Franceschini, M., Hueber, D., Gratton, E., and Fantini, S.
J. Perinat. Med., 27: 279-286, 1999
Noninvasive detection of fast signals from the cortex using frequency-domain optical methods.
Gratton G, Fabiani M, Corballis PM, Gratton E.
Ann N Y Acad Sci. 1997 May 30;820:286-98; discussion 298-9. Review.. PMID: 9237461
Can we measure correlates of neuronal activity with non-invasive optical methods?
Gratton G, Fabiani M, Corballis PM.
Adv Exp Med Biol. 1997;413:53-62. Review. PMID: 9238485
  Non invasive near infrared optical imaging of human brain function with subsecond temporal resolution.
Fabiani, M., Gratton, G., and Corballis, P.
Journal of Biomedical Optics, Vol. 1 No. 4, (1996.), pp. 387-398
  Rapid Changes of Optical Parameters in the Human Brain during a Tapping Task.
Gratton G, Fabiani M, Friedman D, Franceschini MA, Fantini S, Corballis PM, and Gratton E.
J. Cogn Neuroscience 7: 446-456,1995
  Shades of grey matter: non invasive optical images of human brain responses during visual stimulation.
Gratton, G., Corballis, P., Cho, E., Fabiani, M., and Hood, D.
Psychophysiology, Vol. 32, (1995), pp. 505-509.
  Feasability of intracranial near infrared optical scanning.
Gratton, G., Maier, J., Fabiani, M., Mantulin, W., and Gratton, E.
Psychophysiology, Vol. 31, (1994), pp. 211-215.

Brain Obstructive Sleep Apnea Syndrome

  Pattern Analysis of Cerebral Hemodynamics Measured by Near-Infrared Spectroscopy in OSA.
CO Olopade, MD, A Michalos, MD, R Gupta, BA, M Lera, PhD, WW Mantulin, PhD, E Gratton, PhD.
Proceedings of the American Thoracic Society 3: A705, 2006
  Effect of OSA on Cerebral Blood Flow Using Near-Infrared Spectroscopy.
C.O. Olopade, MD, A. Michalos, MD, R. Gupta, BA, E. Mensah, PhD, N. Fossland, BA, D. Picchietti, MD, D. Greeley, MD, S. Manchanda, MD, E. Gratton, PhD.
Proceedings of the American Thoracic Society 2: A527, 2005
  Age-correlated changes in cerebral hemodynamics assessed by near-infrared spectroscopy.
Safonova, L.P., A. Michalos, U. Wolf, M. Wolf, D.M. Hueber, J.H. Choi, R. Gupta, C. Polzonetti, W.W. Mantulin and E. Gratton.
Archives of Gerontology and Geriatrics 39(3): 207-225, 2004
  Near-infrared spectroscopy for the assessment of vascular responsiveness of the brain: A screening method for cerebrovascular morbidity in obstructive sleep apnea.
Michalos, A., L.P Safonova, C.S. Olopade, J.H. Choi, W.W. Mantulin, D.M. Hueber,  B. Barbieri, E  Gratton.
SLEEP 26(suppl): 0983.R, A390-391, 2003
  Near-infrared brain oximetry in obstructive sleep apnea syndrome.
Michalos, A., L.P Safonova, J.H. Choi, B. Barbieri, E.  Gratton.
Sleep Medicine 4(suppl. 1): S31-S32, 2003
Near-infrared spectroscopy and polysomnography during aal-night sleep in human subjects
S. Fantini, P. Aggarwal, K. Chen, M. A. Franceschini, and B. L. Ehrenberg
Proc. SPIE 5068: 155-162, 2003.
  Near-infrared spectroscopy for diagnosis and screening of cerebrovascular morbidity in obstructive sleep apnea syndrome.
Michalos, A., L.P. Safonova, J.H. Choi, R. Gupta, C. Polzonetti, M. Calderon and E. Gratton.
Proceedings, II International Symposium : "Shedding New Light on Disease: Optical Diagnostics for the New Millennium." p. 16, June 23-27, 2002, Reims, France
  Evaluation of brain oxygenation and hemodynamics by near-infrared spectroscopy.
Michalos, A., L.P. Safonova, U. Wolf, M. Wolf, J.H. Choi, R. Gupta, W.W.  Mantulin, D.M. Hueber, B. Barbieri and E. Gratton. Obstructive Sleep Apnea:
SLEEP 25(suppl): 547.R, A390-391, 2002
  Reduced cerebral hemodynamic response in sleep disorders: A NIRS frequency domain study.
Michalos, A.,  L.P. Safonova, D.M. Hueber, U. Wolf, M. Wolf, J.H. Choi, R. Gupta, C. Polzonetti, B. Barbieri, W.W. Mantulin and E. Gratton.  Optical Society of America.
Biomedical Topics: MA1, 248-250, 2002
  Age correlated changes in cerebral hemodynamics assessed by near-infrared spectroscopy.
Safonova, L.P., A. Michalos, D.M. Hueber, U. Wolf, M. Wolf, Jee H. Choi, R. Gupta, C. Polzonetti, B. Barbieri, W.W. Mantulin and E. Gratton.
Optical Society of America Biomedical Topics: SuD35, 149-151, 2002
  Assessment of cerebral oxygenation and hemodynamics in obstructive sleep apnea syndrome.
Michalos, A., L.A. Paunescu, M. Wolf, U. Wolf, V. Toronov, M.A. Franceschini, S. Fantini and E. Gratton.
Optical Society of America Biomedical Topics: SuH16, 163-165, 2000

Peripheral Vascular Disease (PVD)

  Localized irregularities in hemoglobin flow and oxygenation in the calf muscle in patients with peripheral vascular disease detected by near-infrared spectrophotometry.
Wolf, U., M. Wolf, J. H. Choi, M. Levi, D. Choudhury, S. Hull, D. Coussirat, L.A. Paunescu, L.P. Safonova, A. Michalos, W.W. Mantulin and E. Gratton.
J Vasc Surg 37(5): 1017-1026, 2003
  Summary of the results of a 95 subject human clinical trial for the diagnosis of peripheral vascular disease using a near infrared frequency domain hemoglobin spectrometer.
Wallace, D., Michener, B., Choudhury, D., Levi, M., Fennelly, P., Hueber, D., and Barbieri, B.
Proc. of SPIE, Vol. 3597, (1999), pp. 300-316.
  Near infrared spectroscopy in the early detection of peripheral vascular disease.
Choudhury, D., Michener, B., Fennelly, P., and Levi, M.
Journal of Vascular Technol. 23: 109-113, 1999
  Near infrared spectroscopy in the evaluation of lower limb ischemia in hemodialysis patients.
Choudhury, D., Michener, B., Fennelly, P., and Levi, M.
Journal of Vascular Technol. 23: 21-23, 1999
  Quantitative near infrared spectroscopy on patients with peripheral vascular disease.
Franceschini, M.
et. al. Proc. of SPIE, Vol. 3194, (1998), pp. 112-115.

Muscle Studies

  Cerebral and muscle oxygen saturation measurement by a frequency-domain near-infrared spectroscopic technique.
Ferrari, M., De Blasi, R.A., Fantini, S., Franceschini, M.A., Barbieri, B., Quaresima, V., and Gratton, E.
Proc. of SPIE, Vol. 2389, (1995), pp. 868-874.
  Cerebral and muscle oxygen saturation measurement by frequency-domain near-infrared spectrometer.
De Blasi, R.A., Fantini, S., Franceschini, M.A., Ferrari, M., and Gratton, E.
Med Biol Eng Comput 33: 228-230,1995
  In vivo study of human tissues with a portable near-infrared tissue spectrometer.
Maier, J.S., Barbieri, B., Chervu, A., Chervu, I., Fantini, S., Franceschini, M.A., Levi, M., Mantulin, W.W., Rosenberg, A., Walker, S.A., and Gratton, E.
Proc. of SPIE, Vol. 2387, (1995), pp. 240-248.
  Quadriceps oxygenation changes during walking and running on a treadmill.
Quaresima, V., Pizzi, A., De Blasi, R., Ferrari, A., and Ferrari, M.
Proc. of SPIE, Vol. 2387, (1995), pp. 249-256.
O2 consumption-O2 delivery relationship and arteriolar resistance in the forearm of critically ill patients measured by near infrared spectroscopy.
De Blasi RA, Ferrari M, Antonelli M, Conti G, Almenrader N, Gasparetto A.
Shock. 1996 Nov;6(5):319-25. PMID: 8946645
  Oxidative metabolism in muscle.
M. Ferrari, T. Binzoni, V. Quaresima,
Philosophical Transactions of the Royal Society B: Biological Sciences. 352(1354): 677 - 683, 1997
  Difference in leg muscles oxygenation during treadmill exercise by a new near infrared frequency domain oximeter.
Quaresima, V., Franceschini, M.A., Fantini, S., Gratton, E., and Ferrari, M.
Proc. SPIE, Vol. 3194, (1998), pp. 116-120.
Comparison between near-infrared oximetry and 99mTc-HMPAO uptake in the resting peripheral muscle under normobaric normoxia and hypobaric hypoxia
Marco Pagani, Ralf Ansjon, Folke Lind, Cathrine Jonsson, Johan Uusijarvi, Gamze Sumen, Hans Jacobsson, Stig A. Larsson.
Proceedings of SPIE. 3194: 151-158, 1998
Calf muscle blood flow and oxygen consumption measured with near infrared spectroscopy during venous occlusion.
Paunescu, L.A., Casavola, C., Franceschini, M.A., Fantini, S., Winter, L., Kim, J., Wood, D., Gratton, E.
SPIE Proc., Vol. 3597, (1999), pp. 317-323.
Scattering coefficient-hemoglobin concentration relation determined by frequency-domain spectroscopy during venous occlusion.
Paunescu, L.A., U. Wolf, M. Wolf, A. Michalos and E. Gratton.
Optical Society of America Biomedical Topics: TuD2, 363-365, 2000
Mapping of oxy-hemoglobin and deoxy-hemoglobin changes of the human calf during venous occlusion.
Wolf, U., M. Wolf, J.H. Choi, L.A. Paunescu, A. Michalos, V. Toronov and E. Gratton.
Proc. 28th Ann Mtg International Society on Oxygen Transport to Tissue (ISOTT), Ed. B. Oeseburg, Pabst Sci Pub; p:5, 2000
Mapping of hemodynamics on the human calf with near infrared spectroscopy and the influence of the adipose tissue thickness.
Wolf, U., M. Wolf, J.H. Choi, L.A. Paunescu, L.P. Safonova, A. Michalos and E. Gratton.
Adv Exp Med Biol 510: 225-230, 2003
Spatial distribution of vastus lateralis blood flow and oxyhemoglobin saturation measured at the end of isometric quadriceps contraction by multi-channel near-infrared spectroscopy.
Quaresima V, Ferrari M, Franceschini MA, Hoimes ML, Fantini S.
J Biomed. Optics 9(2): 413-20, 2004
Microvascular dysfunction and skeletal muscle oxygenation assessed by phase-modulation near-infrared spectroscopy in patients with septic shock.
De Blasi RA, Palmisani S, Alampi D, Mercieri M, Romano R, Collini S, Pinto G.
Intensive Care Med. 2005 Dec;31(12):1661-8. Epub 2005 Oct 5. PMID: 16205889
Effects of fibre orientation, myoglobin redox form, and postmortem storage on NIR tissue oximeter mearuments of beef longissimus muscle
Mohan, A., Hunt, M.C., Barstow, T.J., Houser, T.A., Bopp, C., Hueber, D.M
Meat Science 84 (2010) 79-85

Sport Medicine

  Pattern of deoxy{Hb + Mb} during ramp cycle exercise: Influence of aerobic fitness status.
Boone, J, Koppo, K, Barstow, T, Bouckaert, J.
Eur. J. Appl. Physiol. 105(6): 851-859, 2009
  Muscle microvascular hemoglobin concentration and oxygenation within the contraction-relaxation cycle
Lutjemeier, B.J., Ferreira, L.F., Poole, D.C., Townsend, D., Barstow, T.J
Respiratory Physiology & Neurobiology 160 (2008) 131-138
  Frequency Analysis of Muscle Contraction and NIRS Variables: Implications for Tissue Gas Exchange
Lutjemeier, Barbara J.; Ferreira, Leonardo F.; Townsend, Dana K.; Barstow, Thomas J.
Medicine & Science in Sports & Exercise. 38(5) Supplement: S248, 2006
Human femoral artery and estimated muscle capillary blood flow kinetics following the onset of exercise.
Harper AJ, Ferreira LF, Lutjemeier BJ, Townsend DK, Barstow TJ.
Exp Physiol. 2006 Jul;91(4):661-71. Epub 2006 Mar 23. PMID: 16556660
Effects of pedal frequency on estimated muscle microvascular O2 extraction.
Ferreira LF, Lutjemeier BJ, Townsend DK, Barstow TJ.
Eur J Appl Physiol. 2006 Mar;96(5):558-63. Epub 2005 Dec 21. PMID: 16369819
Kinetics of restoration of arteriolar tone after exercise.
Barstow TJ, Lutjemeier BJ, Ferreira LF.
J Appl Physiol. 2005 Aug;99(2):775. No abstract available. PMID: 16020445
Kinetics of estimated human muscle capillary blood flow during recovery from exercise.
Ferreira LF, Harper AJ, Townsend DK, Lutjemeier BJ, Barstow TJ.
Exp Physiol. 2005 Sep;90(5):715-26. Epub 2005 May 20. PMID: 15908509
Dynamics of skeletal muscle oxygenation during sequential bouts of moderate exercise.
Ferreira LF, Lutjemeier BJ, Townsend DK, Barstow TJ.
Exp Physiol. 2005 May;90(3):393-401. Epub 2005 Feb 11. PMID: 15708875
Muscle contraction-blood flow interactions during upright knee extension exercise in humans.
Lutjemeier BJ, Miura A, Scheuermann BW, Koga S, Townsend DK, Barstow TJ.
J Appl Physiol. 2005 Apr;98(4):1575-83. Epub 2004 Nov 19. PMID: 15557016
Muscle capillary blood flow kinetics estimated from pulmonary O2 uptake and near-infrared spectroscopy.
Ferreira LF, Townsend DK, Lutjemeier BJ, Barstow TJ.
J Appl Physiol. 2005 May;98(5):1820-8. Epub 2005 Jan 7. PMID: 15640391
  Muscle Oxygenation during Incremental Exercise and Recovery: Implications of Assuming Constant Scattering
Ferreira, Leonardo Franklin; Hueber, Dennis M.; Lutjemeier, Barbara J.; Townsend, Dana K.; Barstow, Thomas
Medicine & Science in Sports & Exercise. 37(5) Supplement May 2005 p S361
  The Influence of Adipose Tissue Thickness on Near-Infrared Spectrometry during Intra-contraction Knee Extension Exercise
Townsend, Dana; Ferreira, Leonardo; Lutjemeier, Barbara; Barstow, Thomas
Medicine & Science in Sports & Exercise. 36(5) Supplement May 2004 p S23
Differences in the oxygenation of the forearm muscle during isometric contraction in trained and untrained subjects.
Usaj A.
Cell Mol Biol Lett. 7(2):375-7, 2002
The endurance training effect on the oxygenation status of an isometrically contracted forearm muscle
Anton Usaj
Pflügers Archiv European Journal of Physiology 442 (7): r155-r156, 2001

Animal Studies

  Lagged covariance structure models for studying functional connectivity in the brain
E. Rykhlevskaia, M. Fabiani, and G. Gratton
NeuroImage, 30, 1203-1218 (2006).
Near-infrared frequency-domain optical spectrometry (NIRS) and magnetic resonance imaging (MRI): a combined approach to studying cerebral maturation of neonatal rabbits.
D'Arceuil HE, Hotakainen MP, Liu C, Themelis G, deCrespigny AJ, Franceschini MA.
Journal of Biomedical Optics 10(1): 011011. 2005.
Human arginase II: crystal structure and physiological role in male and female sexual arousal.
Cama E, Colleluori DM, Emig FA, Shin H, Kim SW, Kim NN, Traish AM, Ash DE, Christianson DW.
Biochemistry. 2003 Jul 22;42(28):8445-51. PMID: 12859189
  Near-Infrared Spiroximetry: Non-Invasive Measurement of Venous Saturation in Piglets and Human Subjects.
M. A. Franceschini, D. A. Boas, A. Zourabian, S. G. Diamond, S. Nadgir, D. W. Lin, J. B. Moore, and S. Fantini,
J. Appl. Physiol. 92: 2-384, 2002.
Hemodynamic evaluation of the female sexual arousal response in an animal model.
Min K, Munarriz R, Berman J, Kim NN, Goldstein I, Traish AM, Stankovic MR.
J Sex Marital Ther. 2001 Oct-Dec;27(5):557-65. PMID: 11554219
  Role of frequency domain optical spectroscopy in the detection of neonatal brain hemorrhage - A newborn piglet study.
Stankovic, MR., Maulik D., Rosenfeld, W., Stubblefield, PG., Kofinas, AD., Gratton, E., Franceschini, MA., Fantini, S., and Hueber, D.
J Matern. Fetal Med. 9: 2-149, 2000.
  Non-invasive optical mapping of the piglet brain in real time.
S. Fantini, M.A. Franceschini, E. Gratton, D. Hueber, W. Rosenfeld, D. Maulik, P. Stubblefield, M.R. Stankovic;
Optics Express. 4(8), 308-314, 1999.
  Non-Invasive Optical Monitoring of the Newborn Piglet Brain Using Continuous-Wave and Frequency-Domain Methods
S. Fantini, D. Hueber, M. A. Franceschini, E. Gratton, W. Rosenfeld, P. G. Stubblefield, D. Maulik, and M. R. Stankovic.
Phys. Med. Biol. 44:1543-1563, 1999

Instrumentation and Methods

A Brief Review on the History of Human Functional Near-Infrared Spectroscopy (fNIRS) Development and Fields of Application
Ferrari, M., and Quaresima, V.
NeuroImage, 2012.
Modulation of an optical needle's reflectivity alters the average photon path through scattering media
Paul Simonson, Enrico D'Amico, and Enrico Gratton
J. Biomed. Opt. 11(1): 14023-31, 2006
  Absolute Near-Infrared Brain Oximeter. 
Michalos A, Gupta R, Safonova LP, Lera M, Olopade CO, Mantulin WW, Hueber DM, Barbieri B, Picchietti D, Greeley D, Gratton E.
7th Annual NIH SBIR/STTR Conference. July 28-29, 2005
  Multi-source phased-array approach to improve the spatial resolution in frequency-domain diffuse optical imaging
Ning Liu   Zucker, M.   Fantini, S.
Lasers and Electro-Optics May 2004 Volume: 2,  3 pp.
  Optical measurements of absorption changes in two-layered diffusive media
F. Fabbri, A. Sassaroli, M. E. Henry, and S. Fantini.
Phys. Med. Biol. 49: 1183-1201, 2004
  Noninvasive determination of the optical properties of adult brain: Near infrared spectroscopy approach.
Jee Hyun Choi, Martin Wolf, Vlad Toronov, Ursula Wolf, Chiara Polzonetti, Dennis Hueber, Larisa P. Safonova, Rajarsi Gupta, Antonios Michalos, William Mantulin, and Enrico Gratton.
J Biomed Opt. 9(1): 221-9, 2004
  Absolute frequency-domain pulse oximetry of the brain: Methodology and measurements.
Wolf, M., M.A.  Franceschini, L.A. Paunescu, V. Toronov,   A. Michalos, U. Wolf, E. Gratton and S. Fantini.
Adv Exp Med Biol 530: 61-73, 2003
  In vitro correlation between reduced scattering coefficient and hemoglobin of human blood determined by near-infrared spectroscopy
Paunescu, L.A., A. Michalos, J. H. Choi, U. Wolf, M. Wolf and E. Gratton.
SPIE Proc. 4250: 319-326, 2001
  Noninvasive optical method of measuring tissue and arterial saturation: an application to absolute pulse oximetry of the brain.
M. A. Franceschini, E. Gratton, and S. Fantini
Opt. Lett. 24: 829-83, 1999
  Near infrared absorption and scattering spectra of tissues in vivo.
Franceschini, M.A., Gratton, E., Hueber, D., and Fantini, S.
SPIE Proc., Vol. 3597, (1999), pp. 526-531.
  Near infrared spectroscopy and the tilting table protocol: a novel method to study the blood flow and the oxygen consumption in tissues.
Casavola, C., Paunescu, L.A., Franceschini, M.A., Fantini, S., Winter, L., Kim, J., Wood, D., Gratton, E.
Proc. Of SPIE, Vol. 3597, (1999), pp. 685-692.
  New optical probe designs for absolute self calibrating NIR tissue hemoglobin measurements.
Hueber, D., Fantini, S., Cerussi, A., and Barbieri, B.
Proc. of SPIE, Vol. 3597, (1999), pp. 618-631.
  Frequency-Domain Optical Measurements in Vitro on Two- and Three-Layered Tissue-Like Phantoms and in Vivo on Infant Heads
M. A. Franceschini, A. Paunescu, S. Fantini, S. Pratesi, J. S. Maier, G. P. Donzelli, and E. Gratton.
OSA Trends in Optics and Photonics on Advances in Optical Imaging and Photon Migration, J. G. Fujimoto and M. Patterson, eds., (Optical Society of America, Washington, DC 1998), Vol XXI, pp. 232-236.
  Influence of a superficial layer in the quantitative spectroscopic study of strongly scattering media.
Franceschini, M.A., Fantini, S., Paunescu, L.A., Maier, J., and Gratton, E.
Applied Optics, Vol. 37, No. 1, (1998), pp. 7447-7458.
  Quantitative spectroscopic determination of hemoglobin concentration and saturation in a turbid medium: analysis of the effect of water absorption.
Franceschini, M. A., Fantini, S., Cerussi, A., Barbieri, B., Chance B., and Gratton, E.
J. of Biomed. Opt., Vol. 2, (1997), pp. 147-153.
  Optical Study of the skeletal muscle during exercise with a second generation frequency-domain tissue oximeter.
Franceschini, M. A., Wallace, D., Barbieri, B., Fantini, S., Mantulin, W.W., Pratesi S., Donzelli, G.P., and Gratton, E.
Proc. of SPIE, Vol. 2979, (1997), pp. 807-814.
  Frequency-domain multichannel optical detector for non-invasive tissue spectroscopy and oximetry.
Fantini, S., Franceschini, M.A., Maier, J.S., Walker, S.A., Barbieri, B., and Gratton, E.
Opt. Eng. 34: 32-42, 1995
Frequency-Domain Method for Determining Spectral Properties in Multiply Scattering Media: Methemoglobin Absorption Spectrum in a Tissue-Like Phantom.
Fishkin JB, So PTC, Cerussi AE, Fantini S, Franceschini MA, and Gratton E.
Appl Opt 34: 1143- 1155, 1995
Semi- Infinite-Geometry Boundary Problem for Light Migration in Highly Scattering Media: a Frequency- Domain Study in the Diffusion Approximation.
Fantini S, Franceschini MA, and Gratton E.
B11: 2128-2138, 1994
Possible Correlation between Blood Glucose Concentration and Reduced Scattering Coefficient of Tissues in the Near-Infrared.
Maier JS, Walker SA, Fantini S, Franceschini MA and Gratton E.
Opt Lett 19: 2062-2064, 1994
  Quantitative determination of the absorption spectra of chromophores in strongly scattering media: a light-emitting-diode based technique.
Fantini, S., Franceschini, M.A., Fishkin, J.B., Barbieri, B., and Gratton, E.
Applied Optics 33: 5204-5213, 1994
Feasibility of intracranial near-infrared optical scanning.
Gratton G, Maier JS, Fabiani M, Mantulin WW, Gratton E.
Psychophysiology. 1994 Mar;31(2):211-5. PMID: 8153259

Imagent

Applications to Infants

  Coupled oxygenation oscillation measured by NIRS and intermittent cerebral activation on EEG in premature infants
N. Roche-Labarbe, F. Wallois, E. Ponchel, G. Kongolo, R. Grebe
NeuroImage 36(3) 718-727 (2007).

Applications to Working Memory in Aging

  Multiple Electrophysiological Indices of Distinctiveness
Fabiani, M.
in "Distinctiveness and Memory", R.R. Hunt and J.B. Worthen, eds., Cambridge, MA; Oxford University Press (in press).
  Electrophysiological and Optical Measures of Cognitive Aging
Fabiani, M., & Gratton, G.
in Cognitive Neuroscience of Aging: Linking Cognitive and Cerebral Aging, R. Cabeza, L. Nyberg, and D. Park, eds.; Oxford University Press (2005).
  Reduced suppression or labile memory? Mechanisms of inefficient filtering of irrelevant information in older adults
Fabiani, M., Low, K. A., Wee, E., Sable, J. J., & Gratton, G.
Journal of Cognitive Neuroscience, 18(4), 1-14 (2006).
  Contributions of cognitive neuroscience to the understanding of behavior and aging
Kramer, A. F., Fabiani, M., & Colcombe, S.
In J. E. Birren & K. W. Schaie (Eds.) Handbook of the Psychology of Aging, Sixth Edition (pp. 57-83). New York, NY: Academic Press (2006).
  Sensory Brain Responses Predict Individual Differences in Working Memory Span and Fluid Intelligence
Brumback, C.R., Low, K.A., Gratton, G. and Fabiani, M.
NeuroReport, 15/2, pp. 373-376 (2004).

Auditory Cortex

  On the Functional Role of Temporal and Frontal Cortex Activation in Passive Detection of Auditory Deviance
Tse, C.-Y., & Penney, T. B. (in press)
NeuroImage.
  Optical Imaging of Perceptual Grouping in Human Auditory Cortex
Sable, J. J., Low, K. A., Whalen, C. J., Maclin, E. L., Fabiani, M., & Gratton, G. (2007)
European Journal of Neuroscience. 25, 298-306.
  Latent Inhibition Mediates N1 Attenuation to Repeating Sounds
Sable, J.J., Low, K.A., Maclin, E.L., Fabiani, M., and Gratton, G.
Psychophysiology (in press).
  Preattentive Change Detection Using the Event-related Optical Signal
Tse, C.-Y., & Penney, T. B. (2007)
Engineering in Medicine and Biology Magazine, IEEE, 26(4), 52-58
  Event-related Optical Imaging Reveals the Temporal Dynamics of Right Temporal and Frontal Cortex Activation in Pre-attentive Change Detection
Tse, C.-Y., Tien, K.-R., & Penney, T. B. (2006)
NeuroImage, 29(1), 314-320.
  Scalp-Recorded Optical Signals Make Sound Processing in the Auditory Cortex Visible
Rinne T., G. Gratton, M. Fabiani, N. Cowan, E. Maclin, A. Stinard, J. Sinkkonen, K. Alho, and Risto Näätänen
NeuroImage 10, 620-624 (1999).

Language Centers

Cortical Dynamics of Semantic Processing During Sentence Comprehension: Evidence From Event-related Optical Signals
Huang, J., Wang, S., Jia, S., Mo, D., Chen, H.C.
PLoS One., 2013, 8(8), e70671.
  Near-infrared spectroscopy as an alternative to the WADA test for language mapping in children, adults and special populations
Gallagher, A., Theriault, M., Maclin, E., Low, K., Gratton, G., Fabiani, F., et al.
Epileptic Disorders, 9(3), 241-255 (2007).
  Imaging the Cortical Dynamics of Language Processing with the Event-related Optical Signal
Tse, C.-Y., Lee, C.-L., Sullivan, J., Garnsey, S., Dell, G. S., Fabiani, M., & Gratton, G.
Proceedings of the National Academy of Sciences, USA, 104(43), 17157-17162 (2007).
  Poor readers of Chinese respond slower than good readers in phonological, rapid naming, and interval timing tasks
Penney, T.B., Leung, K.M, Chan, P.C., Meng, X., & McBride-Chang, C.A.
Annals of Dyslexia, 55, 9-27 (2005).
  Speeded naming and dyslexia
Penney, T.B., Wong, S., Ng, K.K., McBride-Chang, C.A.
in T. Sakamoto (Ed.), Communicating Skills of Intention (pp. 75-90). Tokyo, Japan: Hituzi Shobo (2007).
  Morphological Structure Awareness, Vocabulary, and Reading
McBride-Chang, C, Hua, S., Ng, J.Y.L., Meng, X., & Penney, T.B.
in Wagner, R.K., Muse, A., & Tannenbaum, K. (Eds.), Vocabulary Acquisition: Implications for Reading Comprehension (pp. 104-122.). New York, NY: Guilford Press (2006).
  Brain responses to segmentally and tonally induced semantic violations in Cantonese
Schirmer, A., Tang, S.L., Penney, T.B., Gunter, C.T., & Chen, H.C.
Journal of Cognitive Neuroscience, 17, 1-12 (2005).

Motor Cortex

Optical Imaging of Motor Cortical Hemodynamic Response to Directional Arm Movements Using Near-infrared Spectroscopy
Tam, N.D., Zouridakis, G.
International Journal of Biological Engineering, 2013, 3(2), 11-17.
The Cortical Control of Cycling Exercise in Stroke Patients: an fNIRS Study
Lin, P.-Y., Chen., J.-J. J., and Lin, S.-I
Human Brain Mapping, (2012).
Number-Space Interactions in the Human Parietal Cortex: Enlightening the SNARC Effect with Functional Near-Infrared Spectroscopy
Cutini, S., Scarpa, F., Scatturin, P., Dell'Acqua, R., and Zorzi, M.
Cerebral Cortex, 54, 919 (2012).
Exploring the Role of Primary and Supplementary Motor Areas in Simple Motor Tasks with fNIRS
Brigadoi, S., Cutini, S., Scarpa, F., Scatturin, P., and Dell'Acqua, R.
Cogn. Process., 13, S97-S101 (2012).
  When in doubt, do it both ways: Brain evidence of the simultaneous activation of conflicting responses in a spatial Stroop task
DeSoto, M. C., Fabiani, M., Geary, D. C., & Gratton, G. (2001)
Journal of Cognitive Neuroscience, 13(4), 523-536.
  Rapid changes of optical parameters in the human brain during a tapping task
Gratton, G., Fabiani, M., Friedman, D., Franceschini, M. A., Fantini, S., & Gratton, E. (1995)
Journal of Cognitive Neuroscience, 7(4), 446-456.
  Rapid Changes of Optical Parameters in the Human Brain During a Tapping Task
G. Gratton, M. Fabiani, D. Friedman, M. A. Franceschini, S. Fantini, P. M. Corballis, and E. Gratton
J. Cognitive Neuroscience 7, 446-456 (1995).
  The Event Related Optical Signal (EROS) to electrical stimulation of the median nerve
Maclin, E. L., Low, K. A., Sable, J. J., Fabiani M, & Gratton, G. (2004)
NeuroImage, 21(4),1798-1804.

Visual Cortex

Fast Optical Signal in Visual Cortex: Improving Detection by General Linear Convolution Model
Chiarelli, A.M., Di Vacri, A., Luca Romani, G., and Merla, A.
NeuroImage, , (2012).
  Time course of activation of human occipital cortex measured with the event-related optical signal (EROS)
Gratton, G., Low, K. A., Maclin, E. L., Brumback, C. R., Gordon, B. A., & M. Fabiani (2006)
Biomedical Optics 2006 Technical Digest (Optical Society of America, Washington, DC, 2006), MD4.
  Comparison of neuronal and hemodynamic measures of the brain response to visual stimulation: an optical imaging study
Gratton, G., Goodman-Wood, M. R., & Fabiani, M. (2001)
Human Brain Mapping, 13(1), 13-25.
  Shades of gray matter: Noninvasive optical images of human brain responses during visual stimulation
Gratton, G., Corballis, P. M., Cho, E., Fabiani, M., & Hood, D. (1995)
Psychophysiology, 32, 505-509.

Cognitive Neuroscience

  Time course of executive processes: Data from the event-related optical signal (EROS).
Gratton, G., Low, K. A., & Fabiani, M.
In S. A. Bunge & J. D. Wallis (Eds.), Perspectives on Rule-Guided Behavior. (pp. 197-223) New York, NY: Oxford University Press (2008).
  Optical imaging of cortical activity elicited by unattended temporal deviants
C.Y. Tse and T.B. Penney
IEEE Engineering in Medicine and Biology Magazine, 26, 52-58 (2007).
  Sensory modality and time perception in children and adult
S. Droit-Volet, T.B. Penney and W.H. Meck
Behavioral Processes., 74, 244-250 (2007).
  Synchronization between background activity and visually evoked potential is not mirrored by focal hyperoxygenation: Implications for the interpretation of vascular brain imaging
S.P. Koch, J. Steinbrink, A. Villringer and H. Obrig
Journal of Neuroscience 26(18): 4940-4948 (2006).
  Fast optical imaging of frontal cortex during active and passive oddball tasks
Low, K. A., Leaver, E., Kramer, A. F., Fabiani, M., & Gratton, G.
Psychophysiology, 43, 127-136 (2006).
  Multiple levels of stimulus representation in visual working memory
E. Shin, M. Fabiani and G. Gratton
Journal of Cognitive Neuroscience, 18 (5), 844-858 (2006).
  Task and sex modulate the brain response to emotional incongruity in Asian listeners
A. Schirmer, M. Lui, B. Maess, N. Eiscoffier, M. Chan and T.B. Penney
Emotion, 6, 406-417 (2006).
  Pre-attentive timing of empty intervals is from marker offset to onset
C.Y. Tse and T.B. Penney
Psychophysiology, 43, 172-179 (2006).
  Event-related optical imaging reveals the temporal dynamics of right temporal and frontal cortex activation in pre-attentive change detection
C.Y. Tse, K.R. Tien and T.B. Penney
NeuroImage, 29, 314-320 (2006).
  Perceptual fluency, semantic familiarity, and recognition-related familiarity: An electrophysiological exploration
D. Nessler, A. Mecklinger and T.B. Penney
Cognitive Brain Research, 22, 265-288 (2005).
  Auditory/visual duration bisection in patients with left or right medial temporal lobe resection
M. Melgire, R. Ragot, S. Samson, T.B. Penney, W.H. Meck, and V. Pouthas
Brain and Cognition, 58, 119-124 (2005).
  Les effets de la modalite sensorielle sur la perception du temps
T. B. Penney and S. Tourret
Psychologie Française, 50, 131-143 (2005).
  Attention mediated interval timing deficits in individuals at high risk for schizophrenia
T.B. Penney, W.H. Meck, S.A. Roberts, J. Gibbon and L. Erlenmeyer-Kimling
Brain and Cognition, 58, 109-118 (2005).
  The use of near infrared brain imaging methods to monitor cognitive states
Fabiani, M., Gratton, G., & Kramer, A. F.
Proceedings of the HCI International 2005 Conference (Volume 5 - Emergent Application Domains in HCI), Mahwah, NJ: Lawrence Erlbaum Associates (2005).
  Multiple visual memory phenomena in a memory search task
Fabiani, M., Ho, J., Stinard, A., & Gratton, G.
Psychophysiology, 40, 472-485 (2003).
  Memory-driven processing in human medial occipital cortex: An event-related optical signal (EROS) study
Gratton, G., Fabiani, M., Goodman-Wood, M. R., & DeSoto, M. C.
Psychophysiology, 35, 348-351 (1998).
  Decoding subjective preference from single-trial near-infrared spectroscopy signals
Sheena Luu, Tom Chau
2009 J. Neural Eng. 6 016003 (8pp)

Brain Computer Interface

Virtual Reality

  An Exploratory fNIRS Study with Immersive Virtual Reality: A New Method for Technical Implementation
Seraglia, B., Gamerini, L., Priftis, K., Scatturin, P., Martinelli, M.,and Cutini, S.
Front. Hum. Nuerosci., 5, (2011).

Fast Signals (EROS: Event Related Optical Signals)

  Event-Related Brain Potentials: Methods, Theory, and Applications
M. Fabiani, G. Gratton, and K. Federmeier
In J. Cacioppo, L. Tassinary,& G. Berntson (Eds.), Handbook of Psychophysiology (pp. 85-119). New York, NY: Cambridge University Press (2007).
  Time course of executive processes: Data from the event-related optical signal (EROS)
G. Gratton, K.A. Low, and M. Fabiani
In S. A. Bunge & J. D. Wallis (Eds.), Perspectives on Rule-Guided Behavior. New York, NY: Oxford University Press (2007).
  Time course of activation of human occipital cortex measured with the event-related optical signal (EROS)
G. Gratton, K.A. Low, E.L. Maclin, C.R. Brumback, B. Gordon, and M. Fabiani
in Biomedical Optics 2006 Technical Digest (Optical Society of America, Washington D.C., (2006).
  Fast optical imaging of frontal cortex during active and passive oddball tasks
K.A. Low, E. Leaver, A.F. Kramer, M. Fabiani, and G. Gratton
Psychophysiology. 43, 127-136 (2006).
  Non-invasive Fast Optical Imaging in Humans
G. Gratton, and M. Fabiani
in Scattered Light Imaging of Brain Function for the Contemporary Clinical Neuroscience Series, D.M. Rector and J.S. George, eds., Totowa, NJ: Humana Press (in press).
  The Event Related Optical Signal (EROS) to Electrical Stimulation of the Median Nerve
E.L. Maclin, K.A. Low, J.J. Sable, M. Fabiani, and G. Gratton
NeuroImage (in press).
  Toward non-invasive 3-D imaging of the time course of cortical activity: investigation of the depth of the event-related optical signal
G. Gratton, A. Sarno, E. Maclin, P. M. Corballis, and M. Fabiani
NeuroImage 11, 491-504 (2000).
  Dynamic brain imaging: Event-related optical signal (EROS) measures of the time course and localization of cognitive-related activity
G. Gratton and M. Fabiani
Psychosonomic Bulletin & Review 5, 535-563 (1998).
  Memory-driven processing in human medial occipital cortex: An event-related optical signal (EROS) study
G. Gratton, M. Fabiani, M.R. Goodman-Wood, and M.C. DeSoto
Psychophysiology 35, 348-351 (1998).
  Fast optical signals: Principles, methods, and experimental results
Gratton, G. & Fabiani, M.
In R. Frostig (Ed.), In Vivo Optical imaging of brain function (pp. 223-247), CRC Press (2002).

Comparison of Imagent and fMRI

  A spatial and temporal comparison of hemodynamic signals measured using optical and functional magnetic resonance imaging during activation in the human primary visual cortex
V. Toronov, X. Zhang, and A.G. Webb
NeuroImage 34 (2007) 1136-1148 (2006).
  Integrated measurement system for simultaneous functional magnetic resonance imaging and diffuse optical tomography in human brain mapping
Xiaofeng Zhang, V.Y. Toronov, and A.G. Webb
Review of Scientif. Instruments 77, 114301 (2006).
  Simultaneous integrated diffuse optical tomography and functional magnetic resonance imaging of the human brain
Xiaofeng Zhang, V.Y. Toronov, and A.G. Webb
Optics Express 13 (14) 5513 (2005).
  The study of cerebral hemodynamic and neuronal response to visual stimulation using simultaneous NIR optical tomography and BOLD fMRI in humans
Zhang, X., Toronov V.Y., Fabiani, M., Gratton, G. & Webb, A.G.
Proc. SPIE Vol. 5686, 566-572 (2005).
  Simultaneous Near-Infrared Spectroscopy and Magnetic Resonance Imaging of Functional Activity in the Human Brain
V. Toronov, E. Gratton, and A. Webb
in "Res. Adv. in Medical Physics", R.M. Mohan ed., 1, 1-15, Global Research Network (2003).
  The Roles of Changes in Deoxyhemoglobin Concentration and Blood Volume in the fMRI BOLD Signal
V. Toronov, S. Walker, R. Gupta, J.H. Choi, E. Gratton, D. Hueber and A. Webb
NeuroImage, 19, 1521-1531 (2003).
  Investigation of human brain hemodynamics by simultaneous near-infrared spectroscopy and functional magnetic resonance imaging
V. Toronov, A. Webb, J. H. Choi, M. Wolf, A. Michalos, E. Gratton and D. Hueber
Medical Physics 28(4), 521-527 (2001).
  Simultaneous functional magnetic resonance and near-infrared imaging of adult human brain
V. Toronov, A. Webb, J. H. Choi, M. Wolf, E. Gratton and D. Hueber
Proc. SPIE Vol. 4250, 380-382 (2001).
  Study of Local Cerebral Hemodynamic Fluctuations by Simultaneous Frequency-Domain near-infrared spectroscopy and fMRI
V. Toronov, A. Webb, J. H. Choi, M. Wolf, L. Safonova, U. Wolf, and E. Gratton
Optics Express 9(8), 417-427 (2001).

Image Reconstruction Algorithms and Technique Development

A New Method Based on ICBM152 Head Surface for Probe Placement in Multichannel fNIRS
Cutini, S., Scatturin, P., and Zorzi, M.
NeuroImage, 54, 919 (2011).
Validation of a method for coregistering scalp recording locations with 3D structural MR images
Whalen, C., Maclin, E. L., Fabiani, M., and Gratton, G. (in press)
Human Brain Mapping, 29(11), 1288-1301 (2011).
Taking NIRS-BCIs Outside the Lab: Towards Achieving Robustness Against Environment Noise
Falk, T.H., Guirgis, M., Power, S., and Chau, T.T.
IEEE Transactions On Neural Systems and Rehabilitation Engineering, 19(2), 136-146 (2011).
Bayesian Filtering of Human Brain Hemodynamic Activity Elicited by Visual Short-Term Maintenance Recorded Through Functional Near-Infrared Spectroscopy (fNIRS)
Scarpa, F., Cutini, S., Scatturin, P., Dell'Acqua, R., and Sparacino, G.
Optics Express, 18(25), 26550-68 (2010).
Spatio-spectral analysis of brain signals
Ombao, H., Shao, X., Rykhlevskaia, E., Fabiani, M., and Gratton, G.
Statistica Sinica, 18, 1465-1482 (2008).
  Improving the signal-to-noise ratio of Event Related Optical Signals (EROS) by manipulating wavelength and modulation frequency
Maclin, E.L., Low, K.A., Fabiani, M., & Gratton, G.
Special issue of IEEE EMBM, 26(4), 47-51 (2007).
  Effects of measurement method, wavelength, and source-detector distance on the fast optical signal
Gratton, G., Brumback, C. R., Gordon, B.A., Pearson, M.A., Low, K. A. & Fabiani, M.
NeuroImage, 32, 1576-1590 (2006).
  Lagged covariance structure models for studying functional connectivity in the brain
Rykhlevskaia, E., Fabiani, M., Gratton, G.
NeuroImage, 30(4), 1203-1218 (2006).
  Level-set algorithm for the reconstruction of functional activation in near-infrared spectroscopic imaging
M. Jacob, Y. Bresler, V. Toronov, X. Zhang and A. Webb
J. of Biomedical Optics 11 (6), 064029 (2006).
  Signal and image processing techniques for functional near-infrared imaging of the human brain
Toronov V. Y., Zhang, X., Fabiani, M., Gratton, G. & Webb, A. G.
Proc. SPIE Vol. 5696, (2005).
  Optimization of the frequency-domain instrument for the near-infrared spectro-imaging of the human brain
V. Toronov, E. D'Amico, D.M. Hueber, E. Gratton, A. Webb, and B. Barbieri
Proc. SPIE, Vol. 5312, 378-383 (2004).
  Optimization of the signal-to-noise ratio of frequency-domain instrumentation for nearinfrared spectro-imaging of the human brain
V. Toronov, E. D'Amico, D. Hueber, E. Gratton, B. Barbieri, and A. Webb
Opt. Express 11, 2717-2729 (2003).
  Optimum Filtering for EROS Measurements
Maclin, E., Gratton, G., & Fabiani, M.
Psychophysiology, 40(4), 542-547 (2003).
  The event-related optical signal (EROS) in visual cortex: Replicability, consistency, localization and resolution
Gratton, G., & Fabiani, M.
Psychophysiology, 40(4), 561-571 (2003).
  Toward non-invasive 3-D imaging of the time course of cortical activity: Investigation of the depth of the event-related optical signal (EROS)
Gratton, G., Sarno, A. J., Maclin, E., Corballis, P. M., & Fabiani, M.
NeuroImage, 11, 491-504 (2000).
  Bootstrap assessment of the reliability of maxima in surface maps of brain activity of individual subjects derived with electrophysiological and optical methods
Fabiani, M., Gratton, G., Corballis, P., Cheng, J., & Friedman, D.
Behavioral Research Methods, Instruments, & Computers, 30, 78-86 (1998).
  Feasibility of intracranial near-infrared optical scanning
Gratton, G., Maier, J. S., Fabiani, M., Mantulin, W., & Gratton, E.
Psychophysiology, 31, 211-215 (1994).

Review of Brain Optical Imaging Studies

Detection of Event-related Hemodynamic Response to Neuroactivation by Dynamic Modeling of Brain Activity
Aqil, M., Hong, K.S., Jeong, M.Y., Ge, S.S.
Neuroimage., 2012, 63(1), 553-68.
Cortical Brain Imaging by Adaptive Filtering of NIRS Signals
Aqil, M., Hong, K.S., Jeong, M.Y., Ge, S.S.
Neurosci Lett., 2012, 514(1), 35-41.
Review: Near Infrared Brain and Muscle Oximetry: From the Discovery to Current Applications
Ferrari, M., and Quaresima, V.
JNIRS, 20, 1-14 (2012).
Functional Near Infrared Optical Imaging in Cognitive Neuroscience: An Introductory Review
Cutini, S., Basso Moro, S., and Bisconti, S.
JNIRS, 20, 75-92 (2012).
A Brief Review on the History of Human Functional Near-Infrared Spectroscopy (fNIRS) Development and Fields of Application
Ferrari, M., and Quaresima, V.
NeuroImage, 63, 921-935 (2012).
  Optical Imaging
G. Gratton and M. Fabiani
In R. Parasuraman & M. Rizzo (Eds.) Neuroergonomics: The Brain at Work (pp. 65-81). Cambridge, MA: Oxford University Press (2007).
  Biosignal processing
G. Gratton
In J. Cacioppo, L. Tassinary, & G. Berntson (Eds.), Handbook of Psychophysiology, 3rd Edition (pp. 834-858), New York, NY: Cambridge University Press (2007).
  Optical imaging of the intact human brain
M. Fabiani, D.D. Schmorrow, and G. Gratton
IEEE Engineering in Medicine and Biology Magazine. 26, 14-16 (2007).
  Lagged covariance structure models for studying functional connectivity in the brain
E. Rykhlevskaia, M. Fabiani, and G. Gratton
NeuroImage, 30, 1203-1218 (2006).
  Measurement of brain activity by near-infrared light
E. Gratton, V. Toronov, U. Wolf, M. Wolf, and A. Webb
J. Biomed. Opt. 10, 011008 (2005).
  Noninvasive determination of the optical properties of adult brain: Near infrared spectroscopy approach
Jee Hyun Choi, M. Wolf, V. Toronov, U. Wolf, C. Polzonetti, D. Hueber, L.P. Safonova, R. Gupta, A. Michalos, W. Mantulin, and E. Gratton
J Biomed Opt. 9(1): 221-9 (2004).
  Seeing right through you: Applications of optical imaging to the study of the human brain
Gratton, G., Fabiani M., Elbert, T., & Rockstroh, B.
Psychophysiology, 40(4), 487-491 (2003).
  Fast cerebral functional signal in the 100ms range detected in the visual cortex by frequency-domain near-infrared spectroscopy
M. Wolf, U. Wolf, J.H. Choi, V. Toronov, L.A. Paunescu, A. Michalos, E. Gratton
Psychophysiology, 40, 521-528 (2003).
  Absolute frequency-domain pulse oximetry of the brain: Methodology and measurements.
M. Wolf, M. A. Franceschini, L.A. Paunescu, V. Toronov, A. Michalos, U. Wolf, E. Gratton, and S. Fantini
Adv. Exp. Med. Biol. 530, 61-73 (2003).
  Fast optical signals: Principles, methods, and experimental results
Gratton, G. & Fabiani, M.
In R. Frostig (Ed.), In Vivo Optical imaging of brain function (pp. 223-247), CRC Press (2002).
  Different Time Evolution of Oxyhemoglobin and Deoxyhemoglobin Concentration Changes in the Visual and Motor Cortex during Functional Stimulation: A near Infrared Spectroscopy Study
M. Wolf, U. Wolf, V. Toronov, A. Michalos, L.A. Paunescu, J.H. Choi, and E. Gratton
NeuroImage, 16, 704-712 (2002).
  Shedding light on brain function: The event-related optical signal
Gratton, G. & Fabiani, M.
Trends in Cognitive Science, 5(8), 357-363 (2001).
  The event-related optical signal: A new tool for studying brain function
Gratton, G., & Fabiani, M.
International Journal of Psychophysiology, 42, 109-121 (2001).
  On-line optical imaging of the human brain with 160-ms temporal resolution
M.A. Franceschini, V. Toronov, M. Filiaci, E. Gratton and S. Fantini
Optics Express 6, 49-57 (2000).
  Near-infrared study of fluctuations in cerebral hemodynamics during rest and motor stimulation: Temporal analysis and spatial mapping
Toronov, V., M. A. Franceschini, M. Filiaci, S. Fantini, M. Wolf, A. Michalos, and E. Gratton
Med. Phys. 27(4), 801-815 (2000).
  On-line optical imaging of the human brain with 160-ms temporal resolution
Franceschini, M. A., V. Toronov, M. Filiaci, E. Gratton, and S. Fantini
Optics Express 6(3), 49-57 (2000).
  Real-time video of cerebral hemodynamics in the human brain using non-invasive optical imaging
Franceschini, M.A., V. Toronov, M. E. Filiaci, M. Wolf, A. Michalos, E. Gratton, and S. Fantini
NeuroImage 11(5) S454 (2000).
  Fast cerebral functional signals in the 100 ms range detected by frequency-domain near-infrared spectroscopy
Wolf, M., U. Wolf, V. Toronov, L. A. Paunescu , A. Michalos, M. A. Franceschini, S. Fantini, and E. Gratton
NeuroImage 11(5) S515 (2000).
  Cerebral hemodynamics measured by near-infrared spectroscopy at rest and during motor activation
M.A. Franceschini, S. Fantini, V. Toronov, M. E. Filiaci, and E. Gratton
In Proc. Inter-Institute Workshop on In Vivo Optical Imaging at the NIH, A. Ganjbakhche ed.,(Optical society of America, Washington DC) pp. 73-80 (1999).
  Shades of gray matter: non-invasive optical images of human brain responses during visual stimulation
G. Gratton, P. M. Corballis, E. Cho, M. Fabiani, and D. C. Hood
Psychophysiology 32, 505-509 (1995).